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CCU002_02 Limb amputation

CVD-COVID-UK consortium, William N Whiteley, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Venexia Walker, Rachel Denholm, Ashley Akbari, Efosa Omigie, Sam Hollings, Emanuele Di Angelantonio, Spiros Denaxas, Angela Wood, Jonathan A C Sterne, Cathie Sudlow

Type
Disease or Syndrome
ID
PH1012
Version ID
2190
Data Sources
GPES Data for Pandemic Planning and Research (COVID-19) , Hospital Episode Statistics Admitted Patient Care , Civil Registration - Deaths , Trusted Research Environments for CVD-COVID-UK / COVID-IMPACT , Secondary Uses Services Payment By Results
Valid event data range
08/12/2020 - 18/03/2021
Sex
Female, Male
Agreement Date
2021-08-23
Coding system
Non-standard codes
Tags /Collections
BHF Data Science Centre Phenotype Library

Definition

Code type is set to 1 for incident events, and 0 for prevalent events.

Publications

  • Association of COVID-19 vaccines ChAdOx1 and BNT162b2 with major venous, arterial, and thrombocytopenic events: whole population cohort study in 46 million adults in England CVD-COVID-UK consortium, William N Whiteley, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Venexia Walker, Rachel Denholm, Ashley Akbari, Efosa Omigie, Sam Hollings, Emanuele Di Angelantonio, Spiros Denaxas, Angela Wood, Jonathan A C Sterne, Cathie Sudlow medRxiv 2021.08.18.21262222; doi: https://doi.org/10.1

Clinical Code List

Rows: 90
Code Description terminology code_type
14N4. Limb: [H/O amputation] or [amputee] CTV3 0.0
14N41 H/O: lower limb amputation CTV3 0.0
14N4Z H/O: limb amputation NOS CTV3 0.0
7L06. Amputation of the lower limb CTV3 1.0
7L060 Hindquarter amputation (& [Ferre] or [Gordon-Taylor] or [Jaboulay] or [King] or [Sorrondo] or [Steelquist]) CTV3 1.0
7L061 Disarticulation hip (& [Boyd] or [Fitzmaurice Kelly]) CTV3 1.0
7L062 Above knee amputation (& Kirk) CTV3 1.0
7L063 Amputation through knee (& named variants) CTV3 1.0
7L06z Amputation of leg NOS CTV3 1.0
7L07. Amputation of the foot CTV3 1.0
7L070 Through ankle amputation (& [Pirogoff] or [Syme]) CTV3 1.0
7L072 Tarsometatarsal amputation (& Lisfranc) CTV3 1.0
7L073 Transmetatarsal amputation (& [Chopart] or [Ray]) CTV3 1.0
7L08. Amputation of toe (& disarticulation) CTV3 1.0
7L080 Amputation of hallux CTV3 1.0
7L081 Amputation of phalanx of toe CTV3 1.0
7L083 Amputation lesser toe CTV3 1.0
7L08y Other specified amputation of toe CTV3 1.0
7L0L2 Amputation of supernumerary toe CTV3 1.0
8D471 Hip disarticulation prosthesis CTV3 1.0
8D476 Midfoot amputation prosthesis CTV3 1.0
U635. [X]Amputation of limb(s) as the cause of abnormal reaction of the patient, or of later complication, without mention of misadventure at the time of the procedure CTV3 1.0
Ub1Qp Lower limb amputee mobility practice CTV3 1.0
Ub1Qq Re-education lower limb amputee lock knee gait CTV3 1.0
Ub1Qr Re-education lower limb amputee free knee gait CTV3 1.0
X607j Limb amputation CTV3 1.0
X6081 Midfoot amputation CTV3 1.0
X6082 Forefoot amputation CTV3 1.0
X6083 Partial amputation of hallux CTV3 1.0
X6084 Terminalisation of hallux CTV3 1.0
X6085 Partial amputation of lesser toe CTV3 1.0
X6086 Terminalisation of lesser toe CTV3 1.0
X76p7 Amputee gait CTV3 1.0
X76p8 Prosthetic limb gait CTV3 1.0
XE07v Amputation of lower limb (& disarticulation) CTV3 1.0
XE0J5 Hindquarter amputation CTV3 1.0
XE0J6 Disarticulation of the hip CTV3 1.0
XE0J7 Above knee amputation CTV3 1.0
XE0J8 Through knee amputation CTV3 1.0
XE0J9 Below knee amputation CTV3 1.0
XE0JA Through ankle amputation CTV3 1.0
XE0JB Disarticulation of the tarsal bones CTV3 1.0
XE0JC Disarticulation of the tarsometatarsal joints CTV3 1.0
XE0JD Amputation through metatarsal bones CTV3 1.0
XE0JF Amputation of toe CTV3 1.0
XE2tf H/O: limb amputation CTV3 0.0
XM1JW Syme through ankle amputation CTV3 1.0
XM1JX Disarticulation of toe CTV3 1.0
XM1R6 Amputee - limb CTV3 1.0
Xa394 Trimming of amputated tip of terminal phalanx CTV3 1.0
Xa3r0 Supramalleolar ankle amputation CTV3 1.0
Xa4CT Lower limb amputee transfer practice CTV3 1.0
Xa6om Upper thigh amputation CTV3 1.0
Xa6on Mid thigh amputation CTV3 1.0
Xa6oo Lower thigh amputation CTV3 1.0
Xa7GS Amputated at hindquarter CTV3 1.0
Xa7GT Amputated at hip CTV3 1.0
Xa7GU Amputated above knee CTV3 1.0
Xa7GV Amputated at upper thigh CTV3 1.0
Xa7GW Amputated at mid thigh CTV3 1.0
Xa7GX Amputated at lower thigh CTV3 1.0
Xa7GY Amputated at knee CTV3 1.0
Xa7GZ Amputated below knee CTV3 1.0
Xa7Ga Amputated foot CTV3 1.0
Xa7Gb Amputated at ankle CTV3 1.0
Xa7Gc Amputated at midfoot CTV3 1.0
Xa7Gd Amputated forefoot CTV3 1.0
Xa7Ge Amputated toe CTV3 1.0
Xa9nc Terminalisation - action CTV3 1.0
XaBLT O/E - Amputated right leg CTV3 1.0
XaBLU O/E - Amputated left leg CTV3 1.0
XaBLV O/E - Amputated right above knee CTV3 1.0
XaBLW O/E - Amputated left above knee CTV3 1.0
XaBLX O/E - Amputated right below knee CTV3 1.0
XaBLY O/E - Amputated left below knee CTV3 1.0
XaBLb O/E - Amputated right forefoot CTV3 1.0
XaBLc O/E - Amputated left forefoot CTV3 1.0
XaBLi O/E - Amputated right toe CTV3 1.0
XaBLj O/E - Amputated left toe CTV3 1.0
XaBYB Amputated big toe CTV3 1.0
XaBYC Amputated leg CTV3 1.0
XaBYD Amputated little toe CTV3 1.0
XaE1K Debridement of below knee amputation stump CTV3 1.0
XaE1L Debridement of above knee amputation stump CTV3 1.0
XaJhA Amputation of toe and metatarsal CTV3 1.0
XaKK7 Amputation of toe NOS CTV3 1.0
XaKK8 Disarticulation of toe NOS CTV3 1.0
XaLsg Delivery of rehabilitation for amputation of limb CTV3 1.0
XaXfV O/E - amputated right midfoot CTV3 1.0
XaXhG O/E - amputated left midfoot CTV3 1.0

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH1012/version/2190/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH1012/version/2190/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH1012', '2190', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH1012/version/2190/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH1012/version/2190/export/codes/?format=json
CSV site_root/phenotypes/PH1012/version/2190/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH1012', '2190', api_client=client)

Version History

Version
ID
Name Owner Publish date
2190 CCU002_02 Limb amputation ieuan.scanlon 2022-05-17 currently shown
2103 CCU002_02 Limb amputation ieuan.scanlon 2022-05-09

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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