CCU002_02 Liver disease

CVD-COVID-UK consortium, William N Whiteley, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Venexia Walker, Rachel Denholm, Ashley Akbari, Efosa Omigie, Sam Hollings, Emanuele Di Angelantonio, Spiros Denaxas, Angela Wood, Jonathan A C Sterne, Cathie Sudlow

PH1014 / 2107 Clinical-Coded Phenotype

  1. Overview

    Phenotype Type
    Disease or syndrome
    Sex
    Both
    Valid Event Date Range
    08/12/2020 - 18/03/2021
    Coding System
    ICD10 codesSNOMED CT codesNon-standard codes
    Data Sources
    GPES Data for Pandemic Planning and Research (COVID-19), Hospital Episode Statistics Admitted Patient Care, Civil Registration - Deaths, Trusted Research Environments for CVD-COVID-UK / COVID-IMPACT, Secondary Uses Services Payment By Results
    Collections
    Phenotype Library
    Tags
    No data

  2. Definition

    Code type is set to 1 for incident events, and 0 for prevalent events.

  3. Implementation

    Implementation

    No data

  4. Clinical Code List

  5. Publication

    • Association of COVID-19 vaccines ChAdOx1 and BNT162b2 with major venous, arterial, and thrombocytopenic events: whole population cohort study in 46 million adults in England CVD-COVID-UK consortium, William N Whiteley, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Venexia Walker, Rachel Denholm, Ashley Akbari, Efosa Omigie, Sam Hollings, Emanuele Di Angelantonio, Spiros Denaxas, Angela Wood, Jonathan A C Sterne, Cathie Sudlow medRxiv 2021.08.18.21262222; doi: https://doi.org/10.1

    Citation Example

    CVD-COVID-UK consortium, William N Whiteley, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Venexia Walker, Rachel Denholm, Ashley Akbari, Efosa Omigie, Sam Hollings, Emanuele Di Angelantonio, Spiros Denaxas, Angela Wood, Jonathan A C Sterne, Cathie Sudlow. PH1014 / 2107 - CCU002_02 Liver disease. Phenotype Library [Online]. 09 May 2022. Available from: http://phenotypes.healthdatagateway.org/phenotypes/PH1014/version/2107/detail/. [Accessed 10 October 2024]

  6. API

    To Export Phenotype Details:

    FormatAPI
    JSON site_root/api/v1/phenotypes/PH1014/version/2107/detail/?format=json
    R Package

    # Download here

    library(ConceptLibraryClient)


    # Connect to API

    client = ConceptLibraryClient::Connection$new(public=TRUE)


    # Get details of phenotype

    phenotype_details = client$phenotypes$get_detail(
     'PH1014',
     version_id=2107
    )

    Py Package

    # Download here

    from pyconceptlibraryclient import Client


    # Connect to API

    client = Client(public=True)


    # Get codelist of phenotype

    phenotype_codelist = client.phenotypes.get_detail(
     'PH1014',
     version_id=2107
    )

    To Export Phenotype Code List:

    FormatAPI
    JSON site_root/api/v1/phenotypes/PH1014/version/2107/export/codes/?format=json
    CSV site_root/phenotypes/PH1014/version/2107/export/codes/
    R Package

    # Download here

    library(ConceptLibraryClient)


    # Connect to API

    client = ConceptLibraryClient::Connection$new(public=TRUE)


    # Get codelist of phenotype

    phenotype_codelist = client$phenotypes$get_codelist(
     'PH1014',
     version_id=2107
    )

    Py Package

    # Download here

    from pyconceptlibraryclient import Client


    # Connect to API

    client = Client(public=True)


    # Get codelist of phenotype

    phenotype_codelist = client.phenotypes.get_codelist(
     'PH1014',
     version_id=2107
    )

  7. Version History

    Version IDNameOwnerPublish date
    2192 CCU002_02 Liver disease ieuan.scanlon2022-05-17
    2107 CCU002_02 Liver disease ieuan.scanlon2022-05-09currently shown