Phenotype Library | phenotype: CCU002_02 Peripheral arterial disease (PAD)

CCU002_02 Peripheral arterial disease (PAD)

CVD-COVID-UK consortium, William N Whiteley, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Venexia Walker, Rachel Denholm, Ashley Akbari, Efosa Omigie, Sam Hollings, Emanuele Di Angelantonio, Spiros Denaxas, Angela Wood, Jonathan A C Sterne, Cathie Sudlow

PH1016

Version ID

2194

Type

Disease or Syndrome

Data Sources

GPES Data for Pandemic Planning and Research (COVID-19) , Hospital Episode Statistics Admitted Patient Care , Civil Registration - Deaths , Trusted Research Environments for CVD-COVID-UK / COVID-IMPACT , Secondary Uses Services Payment By Results

Valid event data range

08/12/2020 - 18/03/2021

Sex

♀ Female ♂ Male

Agreement Date

2021-08-23

Coding system

SNOMED CT codes

Collections

BHF Data Science Centre Phenotype Library

Definition

Code type is set to 1 for incident events, and 0 for prevalent events.

Publications

Association of COVID-19 vaccines ChAdOx1 and BNT162b2 with major venous, arterial, and thrombocytopenic events: whole population cohort study in 46 million adults in England CVD-COVID-UK consortium, William N Whiteley, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Venexia Walker, Rachel Denholm, Ashley Akbari, Efosa Omigie, Sam Hollings, Emanuele Di Angelantonio, Spiros Denaxas, Angela Wood, Jonathan A C Sterne, Cathie Sudlow medRxiv 2021.08.18.21262222; doi: https://doi.org/10.1

Clinical Code List

CSV

JSON

XML

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C2892/7413 CCU002_02 Peripheral arterial disease (PAD) - Phenotypes - England primary care EHR: Peripheral arterial disease diagnosis - SNOMED CT codes

Rows: 17

Code	Description	terminology	code_type
127014009	Diabetic peripheral angiopathy	SNOMEDCT	1.0
201250006	Ischaemic ulcer diabetic foot	SNOMEDCT	1.0
233958001	Peripheral ischaemia	SNOMEDCT	1.0
233961000	Lower limb ischemia	SNOMEDCT	1.0
275520000	Claudication	SNOMEDCT	1.0
301755001	Ischemic foot	SNOMEDCT	1.0
307408003	Ischaemic toe	SNOMEDCT	1.0
31211000119101	Peripheral vascular disease due to type I diabetes	SNOMEDCT	1.0
314902007	Type II diabetes mellitus with peripheral angiopathy	SNOMEDCT	1.0
399957001	Peripheral arterial occlusive disease (disorder)	SNOMEDCT	1.0
400047006	Peripheral vascular disease (disorder)	SNOMEDCT	1.0
421365002	Peripheral circulatory disorder associated with type I diabetes mellitus (disorder)	SNOMEDCT	1.0
421895002	Peripheral circulatory disorder associated with diabetes mellitus (disorder)	SNOMEDCT	1.0
422166005	Peripheral circulatory disorder associated with type II diabetes mellitus (disorder)	SNOMEDCT	1.0
422275004	Gangrene associated with diabetes mellitus (disorder)	SNOMEDCT	1.0
63491006	Intermittent claudication	SNOMEDCT	1.0
836711000000108	Ischaemic lower limb pain at rest (finding)	SNOMEDCT	1.0

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH1016/version/2194/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH1016/version/2194/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH1016', '2194', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH1016/version/2194/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH1016/version/2194/export/codes/?format=json
CSV	site_root/phenotypes/PH1016/version/2194/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH1016', '2194', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
2194	CCU002_02 Peripheral arterial disease (PAD)	ieuan.scanlon	2022-05-17	currently shown
2111	CCU002_02 Peripheral arterial disease (PAD)	ieuan.scanlon	2022-05-09