Phenotypes > CCU002_02 Smoking status

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CCU002_02 Smoking status

CVD-COVID-UK consortium, William N Whiteley, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Venexia Walker, Rachel Denholm, Ashley Akbari, Efosa Omigie, Sam Hollings, Emanuele Di Angelantonio, Spiros Denaxas, Angela Wood, Jonathan A C Sterne, Cathie Sudlow

ID
PH1017
Version ID
2195
Type
Disease or Syndrome
Data Sources
GPES Data for Pandemic Planning and Research (COVID-19) , Hospital Episode Statistics Admitted Patient Care , Civil Registration - Deaths , Trusted Research Environments for CVD-COVID-UK / COVID-IMPACT , Secondary Uses Services Payment By Results
Valid event data range
08/12/2020 - 18/03/2021
Sex
♀  Female ♂  Male
Agreement Date
2021-08-23
Coding system
SNOMED CT codes
Collections
BHF Data Science Centre Phenotype Library
Tags
No tags

Definition

Code type is set to 1 for incident events, and 0 for prevalent events.

Publications

  • Association of COVID-19 vaccines ChAdOx1 and BNT162b2 with major venous, arterial, and thrombocytopenic events: whole population cohort study in 46 million adults in England CVD-COVID-UK consortium, William N Whiteley, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Venexia Walker, Rachel Denholm, Ashley Akbari, Efosa Omigie, Sam Hollings, Emanuele Di Angelantonio, Spiros Denaxas, Angela Wood, Jonathan A C Sterne, Cathie Sudlow medRxiv 2021.08.18.21262222; doi: https://doi.org/10.1

Clinical Code List

Expand All  /  Collapse All
Rows: 29
Code Description terminology
1092031000000100 Ex-smoker amount unknown (finding) SNOMEDCT
1092041000000100 Ex-very heavy smoker (40+/day) (finding) SNOMEDCT
1092071000000100 Ex-heavy smoker (20-39/day) (finding) SNOMEDCT
1092091000000100 Ex-moderate smoker (10-19/day) (finding) SNOMEDCT
1092111000000100 Ex-light smoker (1-9/day) (finding) SNOMEDCT
1092131000000100 Ex-trivial smoker (<1/day) (finding) SNOMEDCT
160617001 Stopped smoking (finding) SNOMEDCT
160620009 Ex-pipe smoker (finding) SNOMEDCT
160621008 Ex-cigar smoker (finding) SNOMEDCT
160625004 Date ceased smoking (observable entity) SNOMEDCT
228486009 Time since stopped smoking (observable entity) SNOMEDCT
230058003 Pipe tobacco consumption (observable entity) SNOMEDCT
230065006 Chain smoker (finding) SNOMEDCT
266918002 Tobacco smoking consumption (observable entity) SNOMEDCT
266921000 Ex-trivial cigarette smoker (<1/day) (finding) SNOMEDCT
266922007 Ex-light cigarette smoker (1-9/day) (finding) SNOMEDCT
266923002 Ex-moderate cigarette smoker (10-19/day) (finding) SNOMEDCT
266924008 Ex-heavy cigarette smoker (20-39/day) (finding) SNOMEDCT
266925009 Ex-very heavy cigarette smoker (40+/day) (finding) SNOMEDCT
266928006 Ex-cigarette smoker amount unknown (finding) SNOMEDCT
281018007 Ex-cigarette smoker (finding) SNOMEDCT
360890004 Intolerant ex-smoker (finding) SNOMEDCT
360900008 Aggressive ex-smoker (finding) SNOMEDCT
48031000119106 Ex-smoker for more than 1 year (finding) SNOMEDCT
492191000000103 Ex roll-up cigarette smoker (finding) SNOMEDCT
53896009 Tolerant ex-smoker (finding) SNOMEDCT
735112005 Date ceased using moist tobacco (observable entity) SNOMEDCT
735128000 Ex-smoker for less than 1 year (finding) SNOMEDCT
8517006 Ex-smoker (finding) SNOMEDCT
Rows: 41
Code Description terminology
134406006 Smoking reduced (finding) SNOMEDCT
160603005 Light cigarette smoker (1-9 cigs/day) (finding) SNOMEDCT
160604004 Moderate cigarette smoker (10-19 cigs/day) (finding) SNOMEDCT
160605003 Heavy cigarette smoker (20-39 cigs/day) (finding) SNOMEDCT
160606002 Very heavy cigarette smoker (40+ cigs/day) (finding) SNOMEDCT
160612007 Keeps trying to stop smoking (finding) SNOMEDCT
160613002 Admitted tobacco consumption possibly untrue (finding) SNOMEDCT
160616005 Trying to give up smoking (finding) SNOMEDCT
160619003 Rolls own cigarettes (finding) SNOMEDCT
160625004 Date ceased smoking (observable entity) SNOMEDCT
203191000000107 Wants to stop smoking (finding) SNOMEDCT
225934006 Smokes in bed (finding) SNOMEDCT
230056004 Cigarette consumption (observable entity) SNOMEDCT
230057008 Cigar consumption (observable entity) SNOMEDCT
230058003 Pipe tobacco consumption (observable entity) SNOMEDCT
230059006 Occasional cigarette smoker (finding) SNOMEDCT
230060001 Light cigarette smoker (finding) SNOMEDCT
230062009 Moderate cigarette smoker (finding) SNOMEDCT
230063004 Heavy cigarette smoker (finding) SNOMEDCT
230064005 Very heavy cigarette smoker (finding) SNOMEDCT
230065006 Chain smoker (finding) SNOMEDCT
266918002 Tobacco smoking consumption (observable entity) SNOMEDCT
266920004 Trivial cigarette smoker (less than one cigarette/day) (finding) SNOMEDCT
266929003 Smoking started (finding) SNOMEDCT
308438006 Smoking restarted (finding) SNOMEDCT
394871007 Thinking about stopping smoking (finding) SNOMEDCT
394872000 Ready to stop smoking (finding) SNOMEDCT
394873005 Not interested in stopping smoking (finding) SNOMEDCT
401159003 Reason for restarting smoking (observable entity) SNOMEDCT
401201003 Cigarette pack-years (observable entity) SNOMEDCT
413173009 Minutes from waking to first tobacco consumption (observable entity) SNOMEDCT
428041000124106 Occasional tobacco smoker (finding) SNOMEDCT
446172000 Failed attempt to stop smoking (finding) SNOMEDCT
449868002 Smokes tobacco daily (finding) SNOMEDCT
56578002 Moderate smoker (20 or less per day) (finding) SNOMEDCT
56771006 Heavy smoker (over 20 per day) (finding) SNOMEDCT
59978006 Cigar smoker (finding) SNOMEDCT
65568007 Cigarette smoker (finding) SNOMEDCT
77176002 Smoker (finding) SNOMEDCT
82302008 Pipe smoker (finding) SNOMEDCT
836001000000109 Waterpipe tobacco consumption (observable entity) SNOMEDCT

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH1017/version/2195/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH1017/version/2195/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH1017', '2195', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH1017/version/2195/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH1017/version/2195/export/codes/?format=json
CSV site_root/phenotypes/PH1017/version/2195/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH1017', '2195', api_client=client)

Version History

Version
ID		 Name Owner Publish date
2195 CCU002_02 Smoking status ieuan.scanlon 2022-05-17 currently shown
2113 CCU002_02 Smoking status ieuan.scanlon 2022-05-09

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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