Phenotype Library | phenotype: CCU002

CCU002_02 Thrombophilia

CVD-COVID-UK consortium, William N Whiteley, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Venexia Walker, Rachel Denholm, Ashley Akbari, Efosa Omigie, Sam Hollings, Emanuele Di Angelantonio, Spiros Denaxas, Angela Wood, Jonathan A C Sterne, Cathie Sudlow

PH1019

Version ID

2197

Type

Disease or Syndrome

Data Sources

GPES Data for Pandemic Planning and Research (COVID-19) , Hospital Episode Statistics Admitted Patient Care , Civil Registration - Deaths , Trusted Research Environments for CVD-COVID-UK / COVID-IMPACT , Secondary Uses Services Payment By Results

Valid event data range

08/12/2020 - 18/03/2021

Sex

♀ Female ♂ Male

Agreement Date

2021-08-23

Coding system

ICD10 codes SNOMED CT codes

Collections

BHF Data Science Centre Phenotype Library

Definition

Code type is set to 1 for incident events, and 0 for prevalent events.

Publications

Association of COVID-19 vaccines ChAdOx1 and BNT162b2 with major venous, arterial, and thrombocytopenic events: whole population cohort study in 46 million adults in England CVD-COVID-UK consortium, William N Whiteley, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Venexia Walker, Rachel Denholm, Ashley Akbari, Efosa Omigie, Sam Hollings, Emanuele Di Angelantonio, Spiros Denaxas, Angela Wood, Jonathan A C Sterne, Cathie Sudlow medRxiv 2021.08.18.21262222; doi: https://doi.org/10.1

Clinical Code List

CSV

JSON

XML

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C2905/7425 CCU002_02 Thrombophilia - Phenotypes - England primary care EHR: Thrombophilia diagnosis - SNOMED CT codes

Rows: 20

Code	Description	terminology	code_type
234467004	Thrombophilia	SNOMEDCT	1.0
439001009	Acquired thrombophilia	SNOMEDCT	1.0
439002002	Thrombophilia due to acquired protein C deficiency	SNOMEDCT	1.0
439125003	Thrombophilia due to acquired protein S deficiency	SNOMEDCT	1.0
439126002	Thrombophilia due to acquired antithrombin III deficiency	SNOMEDCT	1.0
439698008	Primary thrombophilia	SNOMEDCT	1.0
441079006	Thrombophilia due to antiphospholipid antibody	SNOMEDCT	1.0
441697004	Thrombophilia associated with pregnancy	SNOMEDCT	1.0
441762006	Thrombophilia due to immobilisation	SNOMEDCT	1.0
441882000	History of thrombophilia	SNOMEDCT	1.0
441945008	Thrombophilia due to trauma	SNOMEDCT	1.0
441946009	Thrombophilia due to myeloproliferative disorder	SNOMEDCT	1.0
441990004	Thrombophilia due to paroxysmal nocturnal haemoglobinuria	SNOMEDCT	1.0
442078001	Thrombophilia due to malignant neoplasm	SNOMEDCT	1.0
442121006	Thrombophilia due to vascular anomaly	SNOMEDCT	1.0
442197003	Thrombophilia caused by drug therapy	SNOMEDCT	1.0
442363001	Thrombophilia caused by vascular device	SNOMEDCT	1.0
442654007	Thrombophilia caused by hormone therapy	SNOMEDCT	1.0
442760001	Thrombophilia caused by antineoplastic agent therapy	SNOMEDCT	1.0
783250007	Hereditary thrombophilia due to congenital histidine-rich (poly-L) glycoprotein deficiency	SNOMEDCT	1.0

C2906/7426 CCU002_02 Thrombophilia - Phenotypes - England hospitalization EHR: Thrombophilia diagnosis - ICD10 codes

Rows: 2

Code	Description	terminology	code_type
D68.5	Primary thrombophilia	ICD10	1.0
D68.6	Other thrombophilia	ICD10	1.0

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH1019/version/2197/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH1019/version/2197/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH1019', '2197', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH1019/version/2197/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH1019/version/2197/export/codes/?format=json
CSV	site_root/phenotypes/PH1019/version/2197/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH1019', '2197', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
2197	CCU002_02 Thrombophilia	ieuan.scanlon	2022-05-17	currently shown
2117	CCU002_02 Thrombophilia	ieuan.scanlon	2022-05-09