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CCU002_02 Thrombophilia

CVD-COVID-UK consortium, William N Whiteley, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Venexia Walker, Rachel Denholm, Ashley Akbari, Efosa Omigie, Sam Hollings, Emanuele Di Angelantonio, Spiros Denaxas, Angela Wood, Jonathan A C Sterne, Cathie Sudlow

Type
Disease or Syndrome
ID
PH1019
Version ID
2197
Data Sources
GPES Data for Pandemic Planning and Research (COVID-19) , Hospital Episode Statistics Admitted Patient Care , Civil Registration - Deaths , Trusted Research Environments for CVD-COVID-UK / COVID-IMPACT , Secondary Uses Services Payment By Results
Valid event data range
08/12/2020 - 18/03/2021
Sex
Female, Male
Agreement Date
2021-08-23
Coding system
ICD10 codes SNOMED CT codes
Tags /Collections
BHF Data Science Centre Phenotype Library

Definition

Code type is set to 1 for incident events, and 0 for prevalent events.

Publications

  • Association of COVID-19 vaccines ChAdOx1 and BNT162b2 with major venous, arterial, and thrombocytopenic events: whole population cohort study in 46 million adults in England CVD-COVID-UK consortium, William N Whiteley, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Venexia Walker, Rachel Denholm, Ashley Akbari, Efosa Omigie, Sam Hollings, Emanuele Di Angelantonio, Spiros Denaxas, Angela Wood, Jonathan A C Sterne, Cathie Sudlow medRxiv 2021.08.18.21262222; doi: https://doi.org/10.1

Clinical Code List

Rows: 20
Code Description terminology code_type
234467004 Thrombophilia SNOMEDCT 1.0
439001009 Acquired thrombophilia SNOMEDCT 1.0
439002002 Thrombophilia due to acquired protein C deficiency SNOMEDCT 1.0
439125003 Thrombophilia due to acquired protein S deficiency SNOMEDCT 1.0
439126002 Thrombophilia due to acquired antithrombin III deficiency SNOMEDCT 1.0
439698008 Primary thrombophilia SNOMEDCT 1.0
441079006 Thrombophilia due to antiphospholipid antibody SNOMEDCT 1.0
441697004 Thrombophilia associated with pregnancy SNOMEDCT 1.0
441762006 Thrombophilia due to immobilisation SNOMEDCT 1.0
441882000 History of thrombophilia SNOMEDCT 1.0
441945008 Thrombophilia due to trauma SNOMEDCT 1.0
441946009 Thrombophilia due to myeloproliferative disorder SNOMEDCT 1.0
441990004 Thrombophilia due to paroxysmal nocturnal haemoglobinuria SNOMEDCT 1.0
442078001 Thrombophilia due to malignant neoplasm SNOMEDCT 1.0
442121006 Thrombophilia due to vascular anomaly SNOMEDCT 1.0
442197003 Thrombophilia caused by drug therapy SNOMEDCT 1.0
442363001 Thrombophilia caused by vascular device SNOMEDCT 1.0
442654007 Thrombophilia caused by hormone therapy SNOMEDCT 1.0
442760001 Thrombophilia caused by antineoplastic agent therapy SNOMEDCT 1.0
783250007 Hereditary thrombophilia due to congenital histidine-rich (poly-L) glycoprotein deficiency SNOMEDCT 1.0
Rows: 2
Code Description terminology code_type
D68.5 Primary thrombophilia ICD10 1.0
D68.6 Other thrombophilia ICD10 1.0

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH1019/version/2197/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH1019/version/2197/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH1019', '2197', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH1019/version/2197/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH1019/version/2197/export/codes/?format=json
CSV site_root/phenotypes/PH1019/version/2197/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH1019', '2197', api_client=client)

Version History

Version
ID
Name Owner Publish date
2197 CCU002_02 Thrombophilia ieuan.scanlon 2022-05-17 currently shown
2117 CCU002_02 Thrombophilia ieuan.scanlon 2022-05-09

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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