Anxiety- Primary Care

John, A., Marchant, A. L., Fone, D. L., McGregor, J. I., Dennis, M. S., Tan, J. O. A., & Lloyd, K.

PH1022 / 2203 Clinical-Coded Phenotype

  1. Overview

    Phenotype Type
    Disease or syndrome
    Sex
    Both
    Valid Event Date Range
    No data
    Coding System
    Read codes v2
    Data Sources
    GP dataset - Welsh Primary Care
    Collections
    Adolescent Data Platform (ADP)DATAMINDPhenotype Library
    Tags
    No data

  2. Definition

    These lists include diagnosis, symptoms and treatments of anxiety (e.g. chronic anxiety, generalized anxiety disorder), anxiety symptoms (e.g. anxiousness), mixed anxiety and depression, panic attacks and panic disorders. We included emotional disorders with onset usually in childhood (John et al., 2015), codes for phobias (Cornish et al., 2016) and obsessive compulsive disorders (John et al 2019; John et al., 2022) and PTSD (Moran et al., 2015) were also included. The algorithm encompassing a historical diagnosis which is currently being treated in combination with a current diagnosis which is treated or untreated improves sensitivity from using current diagnosis alone (John et al, 2016). This method was optimal for identifying common mental disorders in primary care.

  3. Implementation

    Implementation

    No data

  4. Clinical Code List

  5. Publication

    • Cornish, R. P., John, A., Boyd, A., Tilling, K., & Macleod, J. (2016). Defining adolescent common mental disorders using electronic primary care data: A comparison with outcomes measured using the CIS-R. BMJ Open, 6(12). https://doi.org/10.1136/bmjopen-2016-013167

      (DOI:10.1136/bmjopen-2016-013167)

    • John, A., Friedmann, Y., Delpozo-Banos, M., Frizzati, A., Ford, T., & Thapar, A. 2022. Association of School Absence and Exclusion with Recorded Neurodevelopmental Disorders, Mental Disorders, or Self-Harm: A Nationwide, Retrospective, Electronic Cohort Study of Children and Young People in Wales, UK.

    • John, A., Marchant, A. L., McGregor, J. I., Tan, J. O. A., Hutchings, H. A., Kovess, V., ... & Lloyd, K. (2015). Recent trends in the incidence of anxiety and prescription of anxiolytics and hypnotics in children and young people: an e-cohort study. Journal of affective disorders, 183, 134-141.

    • John, A., McGregor, J., Fone, D., Dunstan, F., Cornish, R.., Lyons, R A., & Lloyd, K R. (2016). Case-finding for common mental disorders of anxiety and depression in primary care: an external validation of routinely collected data, BMC Medical Informatics and Decision Making. https://bmcmedinformdecismak.biomedcentral.com/articles/10.1186/s12911-016-0274-7

      (DOI:10.1186/s12911-016-0274-7)

    • John, A, Wood, S., Rees, S., Wang, T., & Marchant, A. (2019). Mental Healthcare in Young People and Young Adults. https://www.ncepod.org.uk/2019ypmh.html

    • Moran, G. M., Calvert, M., Feltham, M. G., Ryan, R., & Marshall, T. (2015). A retrospective cohort study to investigate fatigue, psychological or cognitive impairment after TIA: protocol paper. BMJ open, 5(4), e008149.

    Citation Example

    John, A., Marchant, A. L., Fone, D. L., McGregor, J. I., Dennis, M. S., Tan, J. O. A., & Lloyd, K.. PH1022 / 2203 - Anxiety- Primary Care. Phenotype Library [Online]. 05 July 2022. Available from: http://phenotypes.healthdatagateway.org/phenotypes/PH1022/version/2203/detail/. [Accessed 23 November 2024]

  6. API

    To Export Phenotype Details:

    FormatAPI
    JSON site_root/api/v1/phenotypes/PH1022/version/2203/detail/?format=json
    R Package

    # Download here

    library(ConceptLibraryClient)


    # Connect to API

    client = ConceptLibraryClient::Connection$new(public=TRUE)


    # Get details of phenotype

    phenotype_details = client$phenotypes$get_detail(
     'PH1022',
     version_id=2203
    )

    Py Package

    # Download here

    from pyconceptlibraryclient import Client


    # Connect to API

    client = Client(public=True)


    # Get codelist of phenotype

    phenotype_codelist = client.phenotypes.get_detail(
     'PH1022',
     version_id=2203
    )

    To Export Phenotype Code List:

    FormatAPI
    JSON site_root/api/v1/phenotypes/PH1022/version/2203/export/codes/?format=json
    CSV site_root/phenotypes/PH1022/version/2203/export/codes/
    R Package

    # Download here

    library(ConceptLibraryClient)


    # Connect to API

    client = ConceptLibraryClient::Connection$new(public=TRUE)


    # Get codelist of phenotype

    phenotype_codelist = client$phenotypes$get_codelist(
     'PH1022',
     version_id=2203
    )

    Py Package

    # Download here

    from pyconceptlibraryclient import Client


    # Connect to API

    client = Client(public=True)


    # Get codelist of phenotype

    phenotype_codelist = client.phenotypes.get_codelist(
     'PH1022',
     version_id=2203
    )

  7. Version History

    Version IDNameOwnerPublish date
    2203 Anxiety- Primary Care zinnurar2022-07-05currently shown