Phenotypes > Aplastic anaemias

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Aplastic anaemias

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

ID
PH105
Version ID
210
Type
Disease or Syndrome
Data Sources
CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD
Valid event data range
01/01/1999 - 01/07/2016
Sex
♀  Female ♂  Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Collections
CALIBER Phenotype Library
Tags
No tags

Definition

At the specified date, a patient is defined as having had 'Aplastic anaemias' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. 'Aplastic anaemias' diagnosis or history of diagnosis during a consultation

OR Secondary care (ICD10)

  1. ALL diagnoses of 'Aplastic anaemias' or history of diagnosis during a hospitalization

Implementation


https://kclhi.org/phenoflow/phenotype/download/310

Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Expand All  /  Collapse All
Rows: 43
Code Description Disease Medcode Category
D20..00 Aplastic anaemia Aplastic anaemias 15422.0 Diagnosis of Aplastic anaemias
D200.00 Constitutional aplastic anaemia Aplastic anaemias 69027.0 Diagnosis of Aplastic anaemias
D200.13 Blackfan - Diamond syndrome Aplastic anaemias 109273.0 Diagnosis of Aplastic anaemias
D200.15 Hypoplastic anaemia - familial Aplastic anaemias 44913.0 Diagnosis of Aplastic anaemias
D200000 Congenital hypoplastic anaemia Aplastic anaemias 37320.0 Diagnosis of Aplastic anaemias
D200011 Constitutional aplastic anaemia without malformation Aplastic anaemias 69061.0 Diagnosis of Aplastic anaemias
D200100 Fanconi's familial refractory anaemia Aplastic anaemias 34754.0 Diagnosis of Aplastic anaemias
D200111 Fanconi's hypoplastic anaemia Aplastic anaemias 64625.0 Diagnosis of Aplastic anaemias
D200200 Constitutional aplastic anaemia with malformation Aplastic anaemias 102848.0 Diagnosis of Aplastic anaemias
D200211 Pancytopenia-dysmelia Aplastic anaemias 31491.0 Diagnosis of Aplastic anaemias
D200300 Constitutional red cell aplasia and hypoplasia Aplastic anaemias 72252.0 Diagnosis of Aplastic anaemias
D200311 Blackfan - Diamond syndrome Aplastic anaemias 32900.0 Diagnosis of Aplastic anaemias
D200312 Congenital pure red cell aplasia Aplastic anaemias 7225.0 Diagnosis of Aplastic anaemias
D200313 Constitutional red cell hypoplasia Aplastic anaemias 47438.0 Diagnosis of Aplastic anaemias
D200314 Congenital red cell hypoplasia Aplastic anaemias 61462.0 Diagnosis of Aplastic anaemias
D200400 Erythrogenesis imperfecta Aplastic anaemias 107828.0 Diagnosis of Aplastic anaemias
D200y00 Other specified constitutional aplastic anaemia Aplastic anaemias 69379.0 Diagnosis of Aplastic anaemias
D201.00 Acquired aplastic anaemia Aplastic anaemias 15658.0 Diagnosis of Aplastic anaemias
D201.11 Normocytic anaemia due to aplasia Aplastic anaemias 43825.0 Diagnosis of Aplastic anaemias
D201000 Aplastic anaemia due to chronic disease Aplastic anaemias 16108.0 Diagnosis of Aplastic anaemias
D201100 Aplastic anaemia due to drugs Aplastic anaemias 43166.0 Diagnosis of Aplastic anaemias
D201111 Hypoplastic anaemia due to drug or chemical substance Aplastic anaemias 32715.0 Diagnosis of Aplastic anaemias
D201200 Aplastic anaemia due to infection Aplastic anaemias 57859.0 Diagnosis of Aplastic anaemias
D201211 Hypoplastic anaemia due to infection Aplastic anaemias 65351.0 Diagnosis of Aplastic anaemias
D201311 Radiation aplastic anaemia Aplastic anaemias 70128.0 Diagnosis of Aplastic anaemias
D201400 Aplastic anaemia due to toxic cause Aplastic anaemias 66239.0 Diagnosis of Aplastic anaemias
D201412 Hypoplastic anaemia due to toxic cause Aplastic anaemias 57114.0 Diagnosis of Aplastic anaemias
D201500 Pancytopenia - acquired Aplastic anaemias 5823.0 Diagnosis of Aplastic anaemias
D201600 Pancytopenia NOS Aplastic anaemias 938.0 Diagnosis of Aplastic anaemias
D201611 Pancytopenia with malformation Aplastic anaemias 31275.0 Diagnosis of Aplastic anaemias
D201612 Pancytopenia with pancreatitis Aplastic anaemias 61326.0 Diagnosis of Aplastic anaemias
D201700 Transient hypoplastic anaemia Aplastic anaemias 34953.0 Diagnosis of Aplastic anaemias
D201800 [X]Pure red cell aplasia Aplastic anaemias 30994.0 Diagnosis of Aplastic anaemias
D201z00 Acquired aplastic anaemia NOS Aplastic anaemias 21723.0 Diagnosis of Aplastic anaemias
D201z12 Red cell hypoplasia Aplastic anaemias 72104.0 Diagnosis of Aplastic anaemias
D201z13 Secondary red cell hypoplasia NEC Aplastic anaemias 31774.0 Diagnosis of Aplastic anaemias
D201z14 Secondary red cell aplasia NEC Aplastic anaemias 65502.0 Diagnosis of Aplastic anaemias
D202.00 Chronic acquired pure red cell aplasia Aplastic anaemias 71965.0 Diagnosis of Aplastic anaemias
D203.00 Transient acquired pure red cell aplasia Aplastic anaemias 40244.0 Diagnosis of Aplastic anaemias
D203000 Transient erythroblastopenia of childhood Aplastic anaemias 47620.0 Diagnosis of Aplastic anaemias
D204.00 Idiopathic aplastic anaemia Aplastic anaemias 41142.0 Diagnosis of Aplastic anaemias
D20X.00 Acquired pure red cell aplasia, unspecified Aplastic anaemias 69269.0 Diagnosis of Aplastic anaemias
D20z.00 Aplastic anaemia NOS Aplastic anaemias 68087.0 Diagnosis of Aplastic anaemias
Rows: 43
Code Description Disease ReadcodeDescr Readcode
102848.0 Diagnosis of Aplastic anaemias Aplastic anaemias Constitutional aplastic anaemia with malformation D200200
107828.0 Diagnosis of Aplastic anaemias Aplastic anaemias Erythrogenesis imperfecta D200400
109273.0 Diagnosis of Aplastic anaemias Aplastic anaemias Blackfan - Diamond syndrome D200.13
15422.0 Diagnosis of Aplastic anaemias Aplastic anaemias Aplastic anaemia D20..00
15658.0 Diagnosis of Aplastic anaemias Aplastic anaemias Acquired aplastic anaemia D201.00
16108.0 Diagnosis of Aplastic anaemias Aplastic anaemias Aplastic anaemia due to chronic disease D201000
21723.0 Diagnosis of Aplastic anaemias Aplastic anaemias Acquired aplastic anaemia NOS D201z00
30994.0 Diagnosis of Aplastic anaemias Aplastic anaemias [X]Pure red cell aplasia D201800
31275.0 Diagnosis of Aplastic anaemias Aplastic anaemias Pancytopenia with malformation D201611
31491.0 Diagnosis of Aplastic anaemias Aplastic anaemias Pancytopenia-dysmelia D200211
31774.0 Diagnosis of Aplastic anaemias Aplastic anaemias Secondary red cell hypoplasia NEC D201z13
32715.0 Diagnosis of Aplastic anaemias Aplastic anaemias Hypoplastic anaemia due to drug or chemical substance D201111
32900.0 Diagnosis of Aplastic anaemias Aplastic anaemias Blackfan - Diamond syndrome D200311
34754.0 Diagnosis of Aplastic anaemias Aplastic anaemias Fanconi's familial refractory anaemia D200100
34953.0 Diagnosis of Aplastic anaemias Aplastic anaemias Transient hypoplastic anaemia D201700
37320.0 Diagnosis of Aplastic anaemias Aplastic anaemias Congenital hypoplastic anaemia D200000
40244.0 Diagnosis of Aplastic anaemias Aplastic anaemias Transient acquired pure red cell aplasia D203.00
41142.0 Diagnosis of Aplastic anaemias Aplastic anaemias Idiopathic aplastic anaemia D204.00
43166.0 Diagnosis of Aplastic anaemias Aplastic anaemias Aplastic anaemia due to drugs D201100
43825.0 Diagnosis of Aplastic anaemias Aplastic anaemias Normocytic anaemia due to aplasia D201.11
44913.0 Diagnosis of Aplastic anaemias Aplastic anaemias Hypoplastic anaemia - familial D200.15
47438.0 Diagnosis of Aplastic anaemias Aplastic anaemias Constitutional red cell hypoplasia D200313
47620.0 Diagnosis of Aplastic anaemias Aplastic anaemias Transient erythroblastopenia of childhood D203000
57114.0 Diagnosis of Aplastic anaemias Aplastic anaemias Hypoplastic anaemia due to toxic cause D201412
57859.0 Diagnosis of Aplastic anaemias Aplastic anaemias Aplastic anaemia due to infection D201200
5823.0 Diagnosis of Aplastic anaemias Aplastic anaemias Pancytopenia - acquired D201500
61326.0 Diagnosis of Aplastic anaemias Aplastic anaemias Pancytopenia with pancreatitis D201612
61462.0 Diagnosis of Aplastic anaemias Aplastic anaemias Congenital red cell hypoplasia D200314
64625.0 Diagnosis of Aplastic anaemias Aplastic anaemias Fanconi's hypoplastic anaemia D200111
65351.0 Diagnosis of Aplastic anaemias Aplastic anaemias Hypoplastic anaemia due to infection D201211
65502.0 Diagnosis of Aplastic anaemias Aplastic anaemias Secondary red cell aplasia NEC D201z14
66239.0 Diagnosis of Aplastic anaemias Aplastic anaemias Aplastic anaemia due to toxic cause D201400
68087.0 Diagnosis of Aplastic anaemias Aplastic anaemias Aplastic anaemia NOS D20z.00
69027.0 Diagnosis of Aplastic anaemias Aplastic anaemias Constitutional aplastic anaemia D200.00
69061.0 Diagnosis of Aplastic anaemias Aplastic anaemias Constitutional aplastic anaemia without malformation D200011
69269.0 Diagnosis of Aplastic anaemias Aplastic anaemias Acquired pure red cell aplasia, unspecified D20X.00
69379.0 Diagnosis of Aplastic anaemias Aplastic anaemias Other specified constitutional aplastic anaemia D200y00
70128.0 Diagnosis of Aplastic anaemias Aplastic anaemias Radiation aplastic anaemia D201311
71965.0 Diagnosis of Aplastic anaemias Aplastic anaemias Chronic acquired pure red cell aplasia D202.00
72104.0 Diagnosis of Aplastic anaemias Aplastic anaemias Red cell hypoplasia D201z12
7225.0 Diagnosis of Aplastic anaemias Aplastic anaemias Congenital pure red cell aplasia D200312
72252.0 Diagnosis of Aplastic anaemias Aplastic anaemias Constitutional red cell aplasia and hypoplasia D200300
938.0 Diagnosis of Aplastic anaemias Aplastic anaemias Pancytopenia NOS D201600
Rows: 2
Code Description Disease Category
D60 Acquired pure red cell aplasia [erythroblastopenia] Aplastic anaemias Diagnosis of Aplastic anaemias
D61 Other aplastic anaemias Aplastic anaemias Diagnosis of Aplastic anaemias

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH105/version/210/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH105/version/210/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH105', '210', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH105/version/210/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH105/version/210/export/codes/?format=json
CSV site_root/phenotypes/PH105/version/210/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH105', '210', api_client=client)

Version History

Version
ID		 Name Owner Publish date
210 Aplastic anaemias ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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