Phenotype Library | phenotype: Moderate or severe liver disease

Moderate or severe liver disease - Charlson primary care

David Metcalfe, James Masters, Antonella Delmestri, Andrew Judge, Daniel Perry, Cheryl Zogg, Belinda Gabbe, Matthew Costa

PH1061

Version ID

2325

Type

Disease or Syndrome

Data Sources

Sex

♀ Female ♂ Male

Agreement Date

20/05/2019

Coding system

Read codes v2

Collections

Phenotype Library

Definition

Moderate or severe liver disease comorbidity category for Charlson index, defined in Read codes for primary care by David Metcalfe et. al. The Charlson comorbidity index score for this phenotype is 3.

Publications

Metcalfe, D., Masters, J., Delmestri, A. et al. Coding algorithms for defining Charlson and Elixhauser co-morbidities in Read-coded databases. BMC Med Res Methodol 19, 115 (2019). https://doi.org/10.1186/s12874-019-0753-5
Charlson ME, Pompei P, Ales KL, et al. A new method of classifying prognostic comorbidity in longitudinal studies: development and validation. J Chronic Dis. 1987;40(5):373–83.
Lyons J, Akbari A, Agrawal U, et al Protocol for the development of the Wales Multimorbidity e-Cohort (WMC): data sources and methods to construct a population-based research platform to investigate multimorbidity BMJ Open 2021;11:e047101. doi: 10.1136/bmjopen-2020-047101

Clinical Code List

CSV

JSON

XML

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C3329/10195 Moderate or severe liver disease Read codes - Charlson - Read codes v2

Rows: 35

Code	Description	Medcode
5719PH	PORTAL HYPERTENSION	306684
573 B	HEPATIC COMA	202263
573 HR	SYNDROME HEPATORENAL	211271
7609.00	Open operations on oesophageal varices	24220
7609300	Local ligation of oesophageal varices	43404
7609400	Open injection sclerotherapy to oesophageal varices	20912
7609y00	Other specified open operation on oesophageal varices	107975
7609z00	Open operation on oesophageal varices NOS	20233
760C300	Fibreoptic endoscopic injection sclerotherapy oesoph varices	11960
760C500	Fibreoptic endoscopic banding of oesophageal varices	16759
760F300	Rigid oesophagoscopic injection sclerotherapy oesoph varices	47214
760F400	Rigid oesophagoscopic banding of oesophageal varices	46647
A700.00	Viral hepatitis A with coma	55962
A702.00	Viral hepatitis B with coma	69053
A704.00	Other specified viral hepatitis with coma	69552
A704000	Viral hepatitis C with coma	65050
A704z00	Other specified viral hepatitis with hepatic coma NOS	89587
G85..11	Oesophageal varices	1641
G850.00	Oesophageal varices with bleeding	24989
G851.00	Oesophageal varices without bleeding	30655
G852.00	Oesophageal varices in diseases EC	44424
G852000	Oesophageal varices with bleeding in diseases EC	96756
G852100	Oesophageal varices without bleeding in diseases EC	73139
G852200	Oesophageal varices in cirrhosis of the liver	26319
G852300	Oesophageal varices in alcoholic cirrhosis of the liver	8363
G852z00	Oesophageal varices in diseases EC NOS	62582
G858.00	Oesophageal varices NOS	10797
Gyu9400	[X]Oesophageal varices in diseases classified elsewhere	105611
J622.00	Hepatic coma	23511
J622.11	Encephalopathy - hepatic	22411
J623.00	Portal hypertension	5129
J624.00	Hepatorenal syndrome	10636
J62y.00	Other sequelae of chronic liver disease	216331
J62z.00	Liver abscess and chronic liver disease causing sequelae NOS	225440
SP14300	Hepatorenal syndrome as a complication of care	10721

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH1061/version/2325/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH1061/version/2325/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH1061', '2325', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH1061/version/2325/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH1061/version/2325/export/codes/?format=json
CSV	site_root/phenotypes/PH1061/version/2325/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH1061', '2325', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
2325	Moderate or severe liver disease - Charlson primary care	coldeaa	2023-02-14	currently shown