Phenotypes > Diabetes with end-organ damage - Charlson primary care

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Diabetes with end-organ damage - Charlson primary care

David Metcalfe, James Masters, Antonella Delmestri, Andrew Judge, Daniel Perry, Cheryl Zogg, Belinda Gabbe, Matthew Costa

ID
PH1068
Version ID
2339
Type
Disease or Syndrome
Data Sources
Sex
♀  Female ♂  Male
Agreement Date
20/05/2019
Coding system
Read codes v2
Collections
Phenotype Library
Tags
Comorbidity Index

Definition

Diabetes with end-organ damage comorbidity category for Charlson index, defined in Read codes for primary care by David Metcalfe et. al. The Charlson comorbidity index score for this phenotype is 2.

Publications

  • Metcalfe, D., Masters, J., Delmestri, A. et al. Coding algorithms for defining Charlson and Elixhauser co-morbidities in Read-coded databases. BMC Med Res Methodol 19, 115 (2019). https://doi.org/10.1186/s12874-019-0753-5

  • Charlson ME, Pompei P, Ales KL, et al. A new method of classifying prognostic comorbidity in longitudinal studies: development and validation. J Chronic Dis. 1987;40(5):373–83.

  • Lyons J, Akbari A, Agrawal U, et al Protocol for the development of the Wales Multimorbidity e-Cohort (WMC): data sources and methods to construct a population-based research platform to investigate multimorbidity BMJ Open 2021;11:e047101. doi: 10.1136/bmjopen-2020-047101

Clinical Code List

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Rows: 249
Code Description Medcode
14F4.00 H/O: Admission in last year for diabetes foot problem 7045
250 F NEUROPATHY DIABETIC 306132
250 LG DIABETIC GLOMERULOSCLEROSIS 201928
250 LK KIMMELSTIEL- WILSON DISEASE/SYNDROME 256383
250 M CHARCOT'S DIABETIC ARTHROPATHY 219965
250 N DIABETIC NEPHROPATHY 306133
2BBF.00 Retinal abnormality - diabetes related 22967
2BBL.00 O/E - diabetic maculopathy present both eyes 9835
2BBP.00 O/E - right eye background diabetic retinopathy 11433
2BBQ.00 O/E - left eye background diabetic retinopathy 11129
2BBR.00 O/E - right eye preproliferative diabetic retinopathy 13099
2BBS.00 O/E - left eye preproliferative diabetic retinopathy 13103
2BBT.00 O/E - right eye proliferative diabetic retinopathy 13097
2BBV.00 O/E - left eye proliferative diabetic retinopathy 13101
2BBW.00 O/E - right eye diabetic maculopathy 13102
2BBX.00 O/E - left eye diabetic maculopathy 13108
2BBk.00 O/E - right eye stable treated prolif diabetic retinopathy 47328
2BBl.00 O/E - left eye stable treated prolif diabetic retinopathy 52041
2BBo.00 O/E - sight threatening diabetic retinopathy 52630
2BBr.00 Impaired vision due to diabetic retinopathy 101881
2G5C.00 Foot abnormality - diabetes related 18056
2G5H.00 O/E - Right diabetic foot - ulcerated 35316
2G5L.00 O/E - Left diabetic foot - ulcerated 35116
2G5V.00 O/E - right chronic diabetic foot ulcer 62384
2G5W.00 O/E - left chronic diabetic foot ulcer 49640
66Av.00 Diabetic assessment of erectile dysfunction 102490
7276.00 Pan retinal photocoagulation for diabetes 11599
8HBG.00 Diabetic retinopathy 12 month review 11018
8HBH.00 Diabetic retinopathy 6 month review 18662
C104.00 Diabetes mellitus with renal manifestation 16502
C104000 Diabetes mellitus, juvenile type, with renal manifestation 93922
C104100 Diabetes mellitus, adult onset, with renal manifestation 35105
C104y00 Other specified diabetes mellitus with renal complications 13279
C104z00 Diabetes mellitus with nephropathy NOS 35107
C105.00 Diabetes mellitus with ophthalmic manifestation 33254
C105000 Diabetes mellitus, juvenile type, + ophthalmic manifestation 69748
C105100 Diabetes mellitus, adult onset, + ophthalmic manifestation 41389
C105y00 Other specified diabetes mellitus with ophthalmic complicatn 47377
C105z00 Diabetes mellitus NOS with ophthalmic manifestation 34283
C106.00 Diabetes mellitus with neurological manifestation 16230
C106.11 Diabetic amyotrophy 59903
C106.12 Diabetes mellitus with neuropathy 7795
C106.13 Diabetes mellitus with polyneuropathy 16491
C106000 Diabetes mellitus, juvenile, + neurological manifestation 67853
C106100 Diabetes mellitus, adult onset, + neurological manifestation 39317
C106y00 Other specified diabetes mellitus with neurological comps 61523
C106z00 Diabetes mellitus NOS with neurological manifestation 22573
C107.00 Diabetes mellitus with peripheral circulatory disorder 35399
C107.11 Diabetes mellitus with gangrene 32403
C107.12 Diabetes with gangrene 32556
C107000 Diabetes mellitus, juvenile +peripheral circulatory disorder 70448
C107100 Diabetes mellitus, adult, + peripheral circulatory disorder 63357
C107200 Diabetes mellitus, adult with gangrene 33807
C107300 IDDM with peripheral circulatory disorder 69124
C107400 NIDDM with peripheral circulatory disorder 56803
C107z00 Diabetes mellitus NOS with peripheral circulatory disorder 65025
C108000 Insulin-dependent diabetes mellitus with renal complications 46963
C108011 Type I diabetes mellitus with renal complications 61344
C108012 Type 1 diabetes mellitus with renal complications 21983
C108100 Insulin-dependent diabetes mellitus with ophthalmic comps 49276
C108112 Type 1 diabetes mellitus with ophthalmic complications 102740
C108200 Insulin-dependent diabetes mellitus with neurological comps 52283
C108211 Type I diabetes mellitus with neurological complications 49146
C108212 Type 1 diabetes mellitus with neurological complications 61829
C108300 Insulin dependent diabetes mellitus with multiple complicatn 52104
C108311 Type I diabetes mellitus with multiple complications 108007
C108500 Insulin dependent diabetes mellitus with ulcer 44443
C108511 Type I diabetes mellitus with ulcer 51957
C108512 Type 1 diabetes mellitus with ulcer 68390
C108600 Insulin dependent diabetes mellitus with gangrene 60499
C108700 Insulin dependent diabetes mellitus with retinopathy 6509
C108711 Type I diabetes mellitus with retinopathy 38161
C108712 Type 1 diabetes mellitus with retinopathy 41049
C108B00 Insulin dependent diabetes mellitus with mononeuropathy 24694
C108B11 Type I diabetes mellitus with mononeuropathy 99231
C108C00 Insulin dependent diabetes mellitus with polyneuropathy 41716
C108C11 Type I diabetes mellitus with polyneuropathy 346841
C108D00 Insulin dependent diabetes mellitus with nephropathy 57621
C108D11 Type I diabetes mellitus with nephropathy 66872
C108F00 Insulin dependent diabetes mellitus with diabetic cataract 44260
C108F11 Type I diabetes mellitus with diabetic cataract 17545
C108G00 Insulin dependent diab mell with peripheral angiopathy 64446
C108H00 Insulin dependent diabetes mellitus with arthropathy 65616
C108H11 Type I diabetes mellitus with arthropathy 62352
C108J00 Insulin dependent diab mell with neuropathic arthropathy 39809
C108J11 Type I diabetes mellitus with neuropathic arthropathy 60208
C108J12 Type 1 diabetes mellitus with neuropathic arthropathy 18230
C108y00 Other specified diabetes mellitus with multiple comps 46290
C108z00 Unspecified diabetes mellitus with multiple complications 64449
C109000 Non-insulin-dependent diabetes mellitus with renal comps 52303
C109011 Type II diabetes mellitus with renal complications 50225
C109012 Type 2 diabetes mellitus with renal complications 18209
C109100 Non-insulin-dependent diabetes mellitus with ophthalm comps 50429
C109111 Type II diabetes mellitus with ophthalmic complications 59725
C109112 Type 2 diabetes mellitus with ophthalmic complications 70316
C109200 Non-insulin-dependent diabetes mellitus with neuro comps 55842
C109211 Type II diabetes mellitus with neurological complications 67905
C109212 Type 2 diabetes mellitus with neurological complications 45919
C109300 Non-insulin-dependent diabetes mellitus with multiple comps 62146
C109312 Type 2 diabetes mellitus with multiple complications 108005
C109400 Non-insulin dependent diabetes mellitus with ulcer 34912
C109411 Type II diabetes mellitus with ulcer 55075
C109412 Type 2 diabetes mellitus with ulcer 65704
C109500 Non-insulin dependent diabetes mellitus with gangrene 40401
C109511 Type II diabetes mellitus with gangrene 62107
C109512 Type 2 diabetes mellitus with gangrene 46150
C109600 Non-insulin-dependent diabetes mellitus with retinopathy 17262
C109611 Type II diabetes mellitus with retinopathy 58604
C109612 Type 2 diabetes mellitus with retinopathy 42762
C109A00 Non-insulin dependent diabetes mellitus with mononeuropathy 72320
C109A11 Type II diabetes mellitus with mononeuropathy 50813
C109B00 Non-insulin dependent diabetes mellitus with polyneuropathy 45467
C109B11 Type II diabetes mellitus with polyneuropathy 47409
C109C00 Non-insulin dependent diabetes mellitus with nephropathy 59365
C109C11 Type II diabetes mellitus with nephropathy 64571
C109C12 Type 2 diabetes mellitus with nephropathy 24836
C109E00 Non-insulin depend diabetes mellitus with diabetic cataract 69278
C109E11 Type II diabetes mellitus with diabetic cataract 48192
C109E12 Type 2 diabetes mellitus with diabetic cataract 44779
C109F00 Non-insulin-dependent d m with peripheral angiopath 54212
C109F11 Type II diabetes mellitus with peripheral angiopathy 54899
C109F12 Type 2 diabetes mellitus with peripheral angiopathy 60699
C109G00 Non-insulin dependent diabetes mellitus with arthropathy 24693
C109G11 Type II diabetes mellitus with arthropathy 18143
C109G12 Type 2 diabetes mellitus with arthropathy 49869
C109H00 Non-insulin dependent d m with neuropathic arthropathy 40962
C109H11 Type II diabetes mellitus with neuropathic arthropathy 47816
C109H12 Type 2 diabetes mellitus with neuropathic arthropathy 66965
C10A500 Malnutritn-relat diabetes melitus wth periph circul complctn 100347
C10E000 Type 1 diabetes mellitus with renal complications 47582
C10E012 Insulin-dependent diabetes mellitus with renal complications 102946
C10E100 Type 1 diabetes mellitus with ophthalmic complications 47649
C10E111 Type I diabetes mellitus with ophthalmic complications 99311
C10E112 Insulin-dependent diabetes mellitus with ophthalmic comps 98071
C10E200 Type 1 diabetes mellitus with neurological complications 42831
C10E212 Insulin-dependent diabetes mellitus with neurological comps 101735
C10E300 Type 1 diabetes mellitus with multiple complications 47650
C10E311 Type I diabetes mellitus with multiple complications 91942
C10E312 Insulin dependent diabetes mellitus with multiple complicat 45276
C10E500 Type 1 diabetes mellitus with ulcer 18683
C10E511 Type I diabetes mellitus with ulcer 93878
C10E512 Insulin dependent diabetes mellitus with ulcer 98704
C10E600 Type 1 diabetes mellitus with gangrene 69993
C10E611 Type I diabetes mellitus with gangrene 102112
C10E612 Insulin dependent diabetes mellitus with gangrene 109051
C10E700 Type 1 diabetes mellitus with retinopathy 18387
C10E711 Type I diabetes mellitus with retinopathy 95343
C10E712 Insulin dependent diabetes mellitus with retinopathy 93875
C10EB00 Type 1 diabetes mellitus with mononeuropathy 68105
C10EC00 Type 1 diabetes mellitus with polyneuropathy 46301
C10EC11 Type I diabetes mellitus with polyneuropathy 91943
C10EC12 Insulin dependent diabetes mellitus with polyneuropathy 101311
C10ED00 Type 1 diabetes mellitus with nephropathy 10418
C10ED12 Insulin dependent diabetes mellitus with nephropathy 102163
C10EF00 Type 1 diabetes mellitus with diabetic cataract 49554
C10EF12 Insulin dependent diabetes mellitus with diabetic cataract 100770
C10EG00 Type 1 diabetes mellitus with peripheral angiopathy 93468
C10EH00 Type 1 diabetes mellitus with arthropathy 18642
C10EJ00 Type 1 diabetes mellitus with neuropathic arthropathy 54008
C10EK00 Type 1 diabetes mellitus with persistent proteinuria 30323
C10EL00 Type 1 diabetes mellitus with persistent microalbuminuria 30294
C10EL11 Type I diabetes mellitus with persistent microalbuminuria 102620
C10EP00 Type 1 diabetes mellitus with exudative maculopathy 22871
C10EP11 Type I diabetes mellitus with exudative maculopathy 97894
C10EQ00 Type 1 diabetes mellitus with gastroparesis 55239
C10EQ11 Type I diabetes mellitus with gastroparesis 108724
C10F000 Type 2 diabetes mellitus with renal complications 18777
C10F011 Type II diabetes mellitus with renal complications 57278
C10F100 Type 2 diabetes mellitus with ophthalmic complications 47321
C10F111 Type II diabetes mellitus with ophthalmic complications 100964
C10F200 Type 2 diabetes mellitus with neurological complications 34268
C10F211 Type II diabetes mellitus with neurological complications 98616
C10F300 Type 2 diabetes mellitus with multiple complications 65267
C10F311 Type II diabetes mellitus with multiple complications 43227
C10F400 Type 2 diabetes mellitus with ulcer 49074
C10F411 Type II diabetes mellitus with ulcer 91646
C10F500 Type 2 diabetes mellitus with gangrene 12736
C10F511 Type II diabetes mellitus with gangrene 104323
C10F600 Type 2 diabetes mellitus with retinopathy 18496
C10F611 Type II diabetes mellitus with retinopathy 49655
C10FA00 Type 2 diabetes mellitus with mononeuropathy 62674
C10FA11 Type II diabetes mellitus with mononeuropathy 95351
C10FB00 Type 2 diabetes mellitus with polyneuropathy 18425
C10FB11 Type II diabetes mellitus with polyneuropathy 50527
C10FC00 Type 2 diabetes mellitus with nephropathy 12640
C10FC11 Type II diabetes mellitus with nephropathy 102201
C10FE00 Type 2 diabetes mellitus with diabetic cataract 44982
C10FE11 Type II diabetes mellitus with diabetic cataract 93727
C10FF00 Type 2 diabetes mellitus with peripheral angiopathy 37806
C10FF11 Type II diabetes mellitus with peripheral angiopathy 104639
C10FG00 Type 2 diabetes mellitus with arthropathy 59253
C10FG11 Type II diabetes mellitus with arthropathy 103902
C10FH00 Type 2 diabetes mellitus with neuropathic arthropathy 35385
C10FH11 Type II diabetes mellitus with neuropathic arthropathy 109197
C10FL00 Type 2 diabetes mellitus with persistent proteinuria 26054
C10FL11 Type II diabetes mellitus with persistent proteinuria 60796
C10FM00 Type 2 diabetes mellitus with persistent microalbuminuria 18390
C10FM11 Type II diabetes mellitus with persistent microalbuminuria 85991
C10FQ00 Type 2 diabetes mellitus with exudative maculopathy 25591
C10FR00 Type 2 diabetes mellitus with gastroparesis 63690
C10H000 DM induced by non-steroid drugs without complication 67212
C10yy00 Other specified diabetes mellitus with other spec comps 10098
C10yz00 Diabetes mellitus NOS with other specified manifestation 70821
C10z.00 Diabetes mellitus with unspecified complication 45491
C10z000 Diabetes mellitus, juvenile type, + unspecified complication 68792
C10z100 Diabetes mellitus, adult onset, + unspecified complication 63762
C10zy00 Other specified diabetes mellitus with unspecified comps 64283
C10zz00 Diabetes mellitus NOS with unspecified complication 64357
C314.11 Renal diabetes 11848
Cyu2300 [X]Unspecified diabetes mellitus with renal complications 100292
F171100 Autonomic neuropathy due to diabetes 17067
F345000 Diabetic mononeuritis multiplex 44033
F35z000 Diabetic mononeuritis NOS 17247
F372.00 Polyneuropathy in diabetes 31790
F372.11 Diabetic polyneuropathy 5002
F372.12 Diabetic neuropathy 2342
F372000 Acute painful diabetic neuropathy 48078
F372100 Chronic painful diabetic neuropathy 35785
F372200 Asymptomatic diabetic neuropathy 24571
F374z00 Polyneuropathy in disease NOS 63555
F381300 Myasthenic syndrome due to diabetic amyotrophy 39420
F381311 Diabetic amyotrophy 2340
F3y0.00 Diabetic mononeuropathy 37315
F420.00 Diabetic retinopathy 1323
F420000 Background diabetic retinopathy 7069
F420100 Proliferative diabetic retinopathy 3286
F420200 Preproliferative diabetic retinopathy 2986
F420300 Advanced diabetic maculopathy 10099
F420400 Diabetic maculopathy 3837
F420500 Advanced diabetic retinal disease 47584
F420600 Non proliferative diabetic retinopathy 10755
F420700 High risk proliferative diabetic retinopathy 30477
F420800 High risk non proliferative diabetic retinopathy 65463
F420z00 Diabetic retinopathy NOS 11626
F440700 Diabetic iritis 17313
F464000 Diabetic cataract 10659
G73y000 Diabetic peripheral angiopathy 34152
K01x111 Kimmelstiel - Wilson disease 45499
K08yA00 Proteinuric diabetic nephropathy 105302
K08yA11 Clinical diabetic nephropathy 107881
K27y700 Erectile dysfunction due to diabetes mellitus 106360
Kyu0300 [X]Glomerular disorders in diabetes mellitus 99628
M271000 Ischaemic ulcer diabetic foot 24327
M271200 Mixed diabetic ulcer - foot 9881
N030000 Diabetic cheiroarthropathy 18142
N030011 Diabetic cheiropathy 57333
N030100 Diabetic Charcot arthropathy 27891
R054200 [D]Gangrene of toe in diabetic 53634
R054300 [D]Widespread diabetic foot gangrene 31053

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH1068/version/2339/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH1068/version/2339/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH1068', '2339', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH1068/version/2339/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH1068/version/2339/export/codes/?format=json
CSV site_root/phenotypes/PH1068/version/2339/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH1068', '2339', api_client=client)

Version History

Version
ID		 Name Owner Publish date
2339 Diabetes with end-organ damage - Charlson primary care coldeaa 2023-02-14 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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