Phenotype Library | phenotype: Asbestosis

Asbestosis

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH107

Version ID

214

Type

Disease or Syndrome

Data Sources

CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

♀ Female ♂ Male

Agreement Date

2019-05-20

Coding system

Read codes v2 ICD10 codes Med codes

Collections

CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Asbestosis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

'Asbestosis' diagnosis or history of diagnosis during a consultation

OR Secondary care (ICD10)

ALL diagnoses of 'Asbestosis' or history of diagnosis during a hospitalization

Implementation

PhenoFlow Implementation:

https://kclhi.org/phenoflow/phenotype/download/316

Publications

Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

CSV

JSON

XML

Expand All / Collapse All

C986/3111 Asbestosis - Primary care - Read codes v2

Rows: 4

Code	Description	Disease	Medcode	Category
H41..00	Asbestosis	Asbestosis	8303.0	Diagnosis of Asbestosis
H410.00	Pleural plaque disease due to asbestosis	Asbestosis	5005.0	History of Asbestosis
H410.11	Asbestos-induced pleural plaque	Asbestosis	100994.0	History of Asbestosis
H41z.00	Asbestosis NOS	Asbestosis	51410.0	Diagnosis of Asbestosis

C987/3113 Asbestosis - Primary care - Med codes

Rows: 4

Code	Description	Disease	ReadcodeDescr	Readcode
100994.0	History of Asbestosis	Asbestosis	Asbestos-induced pleural plaque	H410.11
5005.0	History of Asbestosis	Asbestosis	Pleural plaque disease due to asbestosis	H410.00
51410.0	Diagnosis of Asbestosis	Asbestosis	Asbestosis NOS	H41z.00
8303.0	Diagnosis of Asbestosis	Asbestosis	Asbestosis	H41..00

C988/3115 Asbestosis - Secondary care - Diagnoses - ICD10 codes

Rows: 1

Code	Description	Disease	Category
J61	Pneumoconiosis due to asbestos and other mineral fibres	Asbestosis	Diagnosis of Asbestosis

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH107/version/214/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH107/version/214/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH107', '214', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH107/version/214/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH107/version/214/export/codes/?format=json
CSV	site_root/phenotypes/PH107/version/214/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH107', '214', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
214	Asbestosis	ieuan.scanlon	2021-10-06	currently shown