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Asbestosis

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH107
Version ID
214
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Asbestosis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. 'Asbestosis' diagnosis or history of diagnosis during a consultation

OR Secondary care (ICD10)

  1. ALL diagnoses of 'Asbestosis' or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 4
Code Description Disease Medcode Category
H41..00 Asbestosis Asbestosis 8303.0 Diagnosis of Asbestosis
H410.00 Pleural plaque disease due to asbestosis Asbestosis 5005.0 History of Asbestosis
H410.11 Asbestos-induced pleural plaque Asbestosis 100994.0 History of Asbestosis
H41z.00 Asbestosis NOS Asbestosis 51410.0 Diagnosis of Asbestosis
Rows: 4
Code Description Disease ReadcodeDescr Readcode
100994.0 History of Asbestosis Asbestosis Asbestos-induced pleural plaque H410.11
5005.0 History of Asbestosis Asbestosis Pleural plaque disease due to asbestosis H410.00
51410.0 Diagnosis of Asbestosis Asbestosis Asbestosis NOS H41z.00
8303.0 Diagnosis of Asbestosis Asbestosis Asbestosis H41..00
Rows: 1
Code Description Disease Category
J61 Pneumoconiosis due to asbestos and other mineral fibres Asbestosis Diagnosis of Asbestosis

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH107/version/214/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH107/version/214/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH107', '214', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH107/version/214/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH107/version/214/export/codes/?format=json
CSV site_root/phenotypes/PH107/version/214/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH107', '214', api_client=client)

Version History

Version
ID
Name Owner Publish date
214 Asbestosis ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

Print - Print page.