Phenotype Library | phenotype: Obesity - Elixhauser primary care

Obesity - Elixhauser primary care

David Metcalfe, James Masters, Antonella Delmestri, Andrew Judge, Daniel Perry, Cheryl Zogg, Belinda Gabbe, Matthew Costa

PH1088

Version ID

2379

Type

Disease or Syndrome

Data Sources

Sex

♀ Female ♂ Male

Agreement Date

20/05/2019

Coding system

Read codes v2

Collections

Phenotype Library

Definition

Obesity comorbidity category for Elixhauser index, defined in Read codes for primary care by David Metcalfe et. al.

Publications

Metcalfe, D., Masters, J., Delmestri, A. et al. Coding algorithms for defining Charlson and Elixhauser co-morbidities in Read-coded databases. BMC Med Res Methodol 19, 115 (2019). https://doi.org/10.1186/s12874-019-0753-5
Elixhauser A, Steiner C, Harris DR, et al. Comorbidity measures for use with administrative data. Med Care. 1998;36(1):8–27.
Lyons J, Akbari A, Agrawal U, et al Protocol for the development of the Wales Multimorbidity e-Cohort (WMC): data sources and methods to construct a population-based research platform to investigate multimorbidity BMJ Open 2021;11:e047101. doi: 10.1136/bmjopen-2020-047101

Clinical Code List

CSV

JSON

XML

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C3356/10249 Obesity Read codes - Elixhauser - Read codes v2

Rows: 52

Code	Description	Medcode
1444.00	H/O: obesity	16196
22A4.11	O/E - overweight	2839
22AA.00	Overweight	103499
22K2.00	Body Mass Index high K/M2	28937
22K4.00	Body mass index index 25-29 - overweight	9015
22K5.00	Body mass index 30+ - obesity	13278
22K7.00	Body mass index 40+ - severely obese	22556
66C..00	Obesity monitoring	11461
66C1.00	Initial obesity assessment	38658
66C2.00	Follow-up obesity assessment	29538
66C4.00	Has seen dietician - obesity	3176
66C5.00	Treatment of obesity changed	64712
66C6.00	Treatment of obesity started	38632
66C7.00	Treatment of obesity stopped	27570
66CE.00	Reason for obesity therapy - occupational	17444
66CN.00	Risk health associated overweight and obesity, at high risk	102514
66CP.00	Risk health associ overweight and obesity, at very high risk	106010
66CS.00	Inter risk hlth overwght obesity adv diet phys act cons drug	104887
66CZ.00	Obesity monitoring NOS	40153
9OK..00	Obesity monitoring admin.	32843
9OK..11	Obesity clinic administration	21744
9OK1.00	Attends obesity monitoring	52034
9OK2.00	Refuses obesity monitoring	67516
9OK3.00	Obesity monitoring default	52036
9OK4.00	Obesity monitoring 1st letter	49409
9OK5.00	Obesity monitoring 2nd letter	55586
9OK6.00	Obesity monitoring 3rd letter	55585
9OK7.00	Obesity monitoring verbal inv.	70950
9OK8.00	Obesity monitor phone invite	67517
9OKA.00	Obesity monitoring check done	47439
9OKZ.00	Obesity monitoring admin.NOS	52735
9hN0.00	Excepted from obesity quality indicators: patient unsuitable	102647
9hN1.00	Excepted from obesity quality indicators: informed dissent	105638
C38..00	Obesity and other hyperalimentation	66406
C380.00	Obesity	430
C380000	Obesity due to excess calories	38799
C380100	Drug-induced obesity	49250
C380200	Extreme obesity with alveolar hypoventilation	38059
C380300	Morbid obesity	8854
C380400	Central obesity	22695
C380500	Generalised obesity	25968
C380600	Adult-onset obesity	104129
C380700	Lifelong obesity	104421
C380800	Childhood obesity	106771
C38y011	Obesity hypoventilation syndrome	103574
C38z.00	Obesity and other hyperalimentation NOS	70898
C38z000	Simple obesity NOS	11401
Cyu7.00	[X]Obesity and other hyperalimentation	52782
Cyu7000	[X]Other obesity	69757
L161.12	Maternal obesity syndrome	48330
ZC2CM00	Dietary advice for obesity	10728
ZV65319	[V]Dietary counselling in obesity	17477

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH1088/version/2379/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH1088/version/2379/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH1088', '2379', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH1088/version/2379/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH1088/version/2379/export/codes/?format=json
CSV	site_root/phenotypes/PH1088/version/2379/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH1088', '2379', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
2379	Obesity - Elixhauser primary care	coldeaa	2023-02-14	currently shown