Psychoses - Elixhauser primary care

David Metcalfe, James Masters, Antonella Delmestri, Andrew Judge, Daniel Perry, Cheryl Zogg, Belinda Gabbe, Matthew Costa

Version ID
Disease or Syndrome
Data Sources
♀  Female ♂  Male
Agreement Date
Coding system
Read codes v2
Phenotype Library
Comorbidity Index


Psychoses comorbidity category for Elixhauser index, defined in Read codes for primary care by David Metcalfe et. al.


  • Metcalfe, D., Masters, J., Delmestri, A. et al. Coding algorithms for defining Charlson and Elixhauser co-morbidities in Read-coded databases. BMC Med Res Methodol 19, 115 (2019).

  • Elixhauser A, Steiner C, Harris DR, et al. Comorbidity measures for use with administrative data. Med Care. 1998;36(1):8–27.

  • Lyons J, Akbari A, Agrawal U, et al Protocol for the development of the Wales Multimorbidity e-Cohort (WMC): data sources and methods to construct a population-based research platform to investigate multimorbidity BMJ Open 2021;11:e047101. doi: 10.1136/bmjopen-2020-047101

Clinical Code List

Rows: 313
Code Description Medcode
13L3.12 Schizophrenic child 31950
13Y2.00 Schizophrenia association member 67943
1464.00 H/O: schizophrenia 6325
146D.00 H/O: manic depressive disorder 11548
146H.00 H/O: psychosis 12777
1BH..00 Delusions 1915
1BH..11 Delusion 17982
1BH0.00 Delusion of persecution 43462
1BH1.00 Grandiose delusions 32875
1BH2.00 Ideas of reference 55479
1BH3.00 Paranoid ideation 22643
1S42.00 Manic mood 22713
212T.00 Psychosis, schizophrenia + bipolar affective disord resolved 19345
212V.00 Bipolar affective disorder resolved 85102
212W.00 Schizophrenia resolved 88275
212X.00 Psychosis resolved 85972
225E.00 O/E - paranoid delusions 12472
225F.00 O/E - delusion of persecution 52523
285..11 Psychotic condition, insight present 4390
286..11 Poor insight into psychotic condition 22644
38C1400 Assessment of cause of psychotic and behavioural symptoms 109365
6657.00 On lithium 22564
6657.11 Lithium monitoring 16889
6657.12 Started lithium 34795
69DD.00 Antipsychotic medication physical health check 109252
8BM0100 Antipsychotic medication review 103676
8HHs.00 Referral to psychosis early intervention service 26178
E00..00 Senile and presenile organic psychotic conditions 33707
E00y.00 Other senile and presenile organic psychoses 15249
E00y.11 Presbyophrenic psychosis 51494
E00z.00 Senile or presenile psychoses NOS 2882
E011100 Korsakov's alcoholic psychosis with peripheral neuritis 11106
E01y.00 Other alcoholic psychosis 33670
E02..00 Drug psychoses 16256
E02y.00 Other drug psychoses 51135
E02yz00 Other drug psychoses NOS 28767
E02z.00 Drug psychosis NOS 26002
E03..00 Transient organic psychoses 55150
E03y.00 Other transient organic psychoses 68201
E03y300 Unspecified puerperal psychosis 2114
E03yz00 Other transient organic psychoses NOS 59197
E03z.00 Transient organic psychoses NOS 57637
E04..00 Other chronic organic psychoses 62087
E04y.00 Other specified chronic organic psychoses 23677
E04z.00 Chronic organic psychosis NOS 39625
E0y..00 Other specified organic psychoses 66545
E0z..00 Organic psychoses NOS 36861
E1...00 Non-organic psychoses 15958
E10..00 Schizophrenic disorders 854
E100.00 Simple schizophrenia 32222
E100.11 Schizophrenia simplex 73295
E100000 Unspecified schizophrenia 15733
E100100 Subchronic schizophrenia 23616
E100200 Chronic schizophrenic 3984
E100300 Acute exacerbation of subchronic schizophrenia 57666
E100400 Acute exacerbation of chronic schizophrenia 44498
E100500 Schizophrenia in remission 58687
E100z00 Simple schizophrenia NOS 53625
E101.00 Hebephrenic schizophrenia 30619
E101000 Unspecified hebephrenic schizophrenia 66506
E101400 Acute exacerbation of chronic hebephrenic schizophrenia 97919
E101500 Hebephrenic schizophrenia in remission 67768
E101z00 Hebephrenic schizophrenia NOS 48054
E102.00 Catatonic schizophrenia 25546
E102000 Unspecified catatonic schizophrenia 58716
E102100 Subchronic catatonic schizophrenia 99199
E102400 Acute exacerbation of chronic catatonic schizophrenia 107222
E102500 Catatonic schizophrenia in remission 102427
E102z00 Catatonic schizophrenia NOS 63867
E103.00 Paranoid schizophrenia 1494
E103000 Unspecified paranoid schizophrenia 33383
E103100 Subchronic paranoid schizophrenia 104760
E103200 Chronic paranoid schizophrenia 31362
E103300 Acute exacerbation of subchronic paranoid schizophrenia 51322
E103400 Acute exacerbation of chronic paranoid schizophrenia 53032
E103500 Paranoid schizophrenia in remission 36172
E103z00 Paranoid schizophrenia NOS 9281
E104.00 Acute schizophrenic episode 576
E105.00 Latent schizophrenia 66410
E105000 Unspecified latent schizophrenia 102311
E105200 Chronic latent schizophrenia 94299
E105500 Latent schizophrenia in remission 96883
E105z00 Latent schizophrenia NOS 102446
E106.00 Residual schizophrenia 38063
E107.00 Schizo-affective schizophrenia 2117
E107.11 Cyclic schizophrenia 99000
E107000 Unspecified schizo-affective schizophrenia 58862
E107100 Subchronic schizo-affective schizophrenia 61098
E107200 Chronic schizo-affective schizophrenia 43800
E107300 Acute exacerbation subchronic schizo-affective schizophrenia 58866
E107400 Acute exacerbation of chronic schizo-affective schizophrenia 63478
E107500 Schizo-affective schizophrenia in remission 56438
E107z00 Schizo-affective schizophrenia NOS 10575
E10y.00 Other schizophrenia 39062
E10y.11 Cenesthopathic schizophrenia 92994
E10y000 Atypical schizophrenia 33338
E10y100 Coenesthopathic schizophrenia 99070
E10yz00 Other schizophrenia NOS 49761
E10z.00 Schizophrenia NOS 8407
E11..00 Affective psychoses 14656
E11..11 Bipolar psychoses 8567
E11..13 Manic psychoses 26161
E110.00 Manic disorder, single episode 37070
E110.11 Hypomanic psychoses 18909
E110000 Single manic episode, unspecified 20110
E110100 Single manic episode, mild 14728
E110200 Single manic episode, moderate 24640
E110300 Single manic episode, severe without mention of psychosis 43093
E110400 Single manic episode, severe, with psychosis 50218
E110600 Single manic episode in full remission 70000
E110z00 Manic disorder, single episode NOS 36611
E111.00 Recurrent manic episodes 26227
E111000 Recurrent manic episodes, unspecified 19967
E111100 Recurrent manic episodes, mild 46425
E111200 Recurrent manic episodes, moderate 27739
E111300 Recurrent manic episodes, severe without mention psychosis 65811
E111400 Recurrent manic episodes, severe, with psychosis 32295
E111500 Recurrent manic episodes, partial or unspecified remission 58863
E111600 Recurrent manic episodes, in full remission 37178
E111z00 Recurrent manic episode NOS 46415
E112400 Single major depressive episode, severe, with psychosis 32159
E113400 Recurrent major depressive episodes, severe, with psychosis 24171
E114.00 Bipolar affective disorder, currently manic 3702
E114.11 Manic-depressive - now manic 17385
E114000 Bipolar affective disorder, currently manic, unspecified 35738
E114100 Bipolar affective disorder, currently manic, mild 36126
E114200 Bipolar affective disorder, currently manic, moderate 46434
E114300 Bipolar affect disord, currently manic, severe, no psychosis 16347
E114400 Bipolar affect disord, currently manic,severe with psychosis 55829
E114500 Bipolar affect disord,currently manic, part/unspec remission 59011
E114600 Bipolar affective disorder, currently manic, full remission 63784
E114z00 Bipolar affective disorder, currently manic, NOS 57605
E115.00 Bipolar affective disorder, currently depressed 4677
E115000 Bipolar affective disorder, currently depressed, unspecified 15923
E115400 Bipolar affect disord, now depressed, severe with psychosis 63701
E116.00 Mixed bipolar affective disorder 31316
E116000 Mixed bipolar affective disorder, unspecified 31535
E116100 Mixed bipolar affective disorder, mild 24689
E116200 Mixed bipolar affective disorder, moderate 63150
E116300 Mixed bipolar affective disorder, severe, without psychosis 63284
E116400 Mixed bipolar affective disorder, severe, with psychosis 54195
E116500 Mixed bipolar affective disorder, partial/unspec remission 63651
E116600 Mixed bipolar affective disorder, in full remission 55064
E116z00 Mixed bipolar affective disorder, NOS 63583
E117.00 Unspecified bipolar affective disorder 14784
E117000 Unspecified bipolar affective disorder, unspecified 49763
E117100 Unspecified bipolar affective disorder, mild 63698
E117200 Unspecified bipolar affective disorder, moderate 68647
E117300 Unspecified bipolar affective disorder, severe, no psychosis 73423
E117400 Unspecified bipolar affective disorder,severe with psychosis 68326
E117500 Unspecified bipolar affect disord, partial/unspec remission 70721
E117600 Unspecified bipolar affective disorder, in full remission 24230
E117z00 Unspecified bipolar affective disorder, NOS 27986
E11y.00 Other and unspecified manic-depressive psychoses 60178
E11y000 Unspecified manic-depressive psychoses 11596
E11y100 Atypical manic disorder 70925
E11y300 Other mixed manic-depressive psychoses 70399
E11yz00 Other and unspecified manic-depressive psychoses NOS 33426
E11z.00 Other and unspecified affective psychoses 41992
E11z000 Unspecified affective psychoses NOS 54607
E11zz00 Other affective psychosis NOS 33425
E12..00 Paranoid states 4261
E120.00 Simple paranoid state 14743
E121.00 Chronic paranoid psychosis 3890
E12z.00 Paranoid psychosis NOS 12771
E13..00 Other nonorganic psychoses 31984
E13..11 Reactive psychoses 20228
E130.00 Reactive depressive psychosis 8478
E131.00 Acute hysterical psychosis 29937
E134.00 Psychogenic paranoid psychosis 24345
E13y.00 Other reactive psychoses 16333
E13y100 Brief reactive psychosis 23538
E13yz00 Other reactive psychoses NOS 26119
E13z.00 Nonorganic psychosis NOS 14965
E13z.11 Psychotic episode NOS 3636
E14..00 Psychoses with origin in childhood 43225
E141.00 Disintegrative psychosis 56143
E141100 Residual disintegrative psychoses 41207
E14y.00 Other childhood psychoses 71819
E14y000 Atypical childhood psychoses 24244
E14yz00 Other childhood psychoses NOS 66757
E14z.00 Child psychosis NOS 52849
E14z.11 Childhood schizophrenia NOS 37395
E1y..00 Other specified non-organic psychoses 16537
E1z..00 Non-organic psychosis NOS 22188
E212.00 Schizoid personality disorder 3369
E212000 Unspecified schizoid personality disorder 67130
E212200 Schizotypal personality 61969
E212z00 Schizoid personality disorder NOS 14747
Eu02z12 [X] Presenile psychosis NOS 47619
Eu02z15 [X] Senile psychosis NOS 27935
Eu03.11 [X]Korsakov's psychosis, nonalcoholic 57993
Eu04.13 [X]Acute / subacute infective psychosis 24387
Eu05200 [X]Organic delusional [schizophrenia-like] disorder 21986
Eu05212 [X]Schizophrenia-like psychosis in epilepsy 31877
Eu0z.11 [X]Organic psychosis NOS 21985
Eu0z.12 [X]Symptomatic psychosis NOS 8766
Eu10514 [X]Alcoholic psychosis NOS 17607
Eu12500 [X]Mental & behav dis due to cannabinoids: psychotic disordr 38429
Eu13500 [X]Mental & behav dis due to seds/hypntcs: psychotic disordr 69138
Eu14500 [X]Mental & behav dis due to use cocaine: psychotic disorder 49565
Eu15500 [X]Mental/behav dis oth stims inc caffeine: psychotic dis 49879
Eu16500 [X]Mental & behav dis due to hallucinogens: psychotic disord 54983
Eu18500 [X]Mental & behav dis due to vol solvents: psychotic disordr 98618
Eu2..00 [X]Schizophrenia, schizotypal and delusional disorders 17281
Eu20.00 [X]Schizophrenia 34236
Eu20000 [X]Paranoid schizophrenia 16764
Eu20011 [X]Paraphrenic schizophrenia 50060
Eu20100 [X]Hebephrenic schizophrenia 43405
Eu20111 [X]Disorganised schizophrenia 53985
Eu20200 [X]Catatonic schizophrenia 61501
Eu20211 [X]Catatonic stupor 20572
Eu20212 [X]Schizophrenic catalepsy 64533
Eu20213 [X]Schizophrenic catatonia 35877
Eu20214 [X]Schizophrenic flexibilatis cerea 31493
Eu20300 [X]Undifferentiated schizophrenia 60013
Eu20311 [X]Atypical schizophrenia 91547
Eu20500 [X]Residual schizophrenia 64264
Eu20511 [X]Chronic undifferentiated schizophrenia 24107
Eu20600 [X]Simple schizophrenia 35848
Eu20y00 [X]Other schizophrenia 49420
Eu20y12 [X]Schizophreniform disord NOS 94001
Eu20y13 [X]Schizophrenifrm psychos NOS 18053
Eu20z00 [X]Schizophrenia, unspecified 34966
Eu21.00 [X]Schizotypal disorder 39316
Eu21.11 [X]Latent schizophrenic reaction 91511
Eu21.12 [X]Borderline schizophrenia 54387
Eu21.13 [X]Latent schizophrenia 64993
Eu21.14 [X]Prepsychotic schizophrenia 62449
Eu21.15 [X]Prodromal schizophrenia 40386
Eu21.16 [X]Pseudoneurotic schizophrenia 49852
Eu21.17 [X]Pseudopsychopathic schizophrenia 71250
Eu21.18 [X]Schizotypal personality disorder 26859
Eu22.00 [X]Persistent delusional disorders 28562
Eu22000 [X]Delusional disorder 34389
Eu22011 [X]Paranoid psychosis 2113
Eu23000 [X]Acute polymorphic psychot disord without symp of schizoph 36720
Eu23012 [X]Cycloid psychosis 21455
Eu23100 [X]Acute polymorphic psychot disord with symp of schizophren 21595
Eu23112 [X]Cycloid psychosis with symptoms of schizophrenia 26143
Eu23200 [X]Acute schizophrenia-like psychotic disorder 11778
Eu23211 [X]Brief schizophreniform disorder 59096
Eu23212 [X]Brief schizophrenifrm psych 70884
Eu23214 [X]Schizophrenic reaction 94604
Eu23300 [X]Other acute predominantly delusional psychotic disorders 44307
Eu23312 [X]Psychogenic paranoid psychosis 27770
Eu23y00 [X]Other acute and transient psychotic disorders 44503
Eu23z00 [X]Acute and transient psychotic disorder, unspecified 34168
Eu23z11 [X]Brief reactive psychosis NOS 31707
Eu23z12 [X]Reactive psychosis 29651
Eu24.13 [X]Induced psychotic disorder 11973
Eu25.00 [X]Schizoaffective disorders 9422
Eu25000 [X]Schizoaffective disorder, manic type 33847
Eu25011 [X]Schizoaffective psychosis, manic type 16905
Eu25012 [X]Schizophreniform psychosis, manic type 51903
Eu25200 [X]Schizoaffective disorder, mixed type 33693
Eu25211 [X]Cyclic schizophrenia 104763
Eu25212 [X]Mixed schizophrenic and affective psychosis 37580
Eu25y00 [X]Other schizoaffective disorders 58532
Eu25z00 [X]Schizoaffective disorder, unspecified 37681
Eu25z11 [X]Schizoaffective psychosis NOS 33410
Eu26.00 [X]Nonorganic psychosis in remission 101987
Eu2y.00 [X]Other nonorganic psychotic disorders 30985
Eu2y.11 [X]Chronic hallucinatory psychosis 31738
Eu2z.00 [X]Unspecified nonorganic psychosis 11244
Eu2z.11 [X]Psychosis NOS 694
Eu30.00 [X]Manic episode 12173
Eu30.11 [X]Bipolar disorder, single manic episode 9521
Eu30000 [X]Hypomania 2741
Eu30100 [X]Mania without psychotic symptoms 13024
Eu30200 [X]Mania with psychotic symptoms 21065
Eu30211 [X]Mania with mood-congruent psychotic symptoms 37102
Eu30212 [X]Mania with mood-incongruent psychotic symptoms 48632
Eu30y00 [X]Other manic episodes 32088
Eu30z00 [X]Manic episode, unspecified 44513
Eu30z11 [X]Mania NOS 4678
Eu31.00 [X]Bipolar affective disorder 6874
Eu31.11 [X]Manic-depressive illness 1531
Eu31000 [X]Bipolar affective disorder, current episode hypomanic 16808
Eu31100 [X]Bipolar affect disorder cur epi manic wout psychotic symp 26299
Eu31200 [X]Bipolar affect disorder cur epi manic with psychotic symp 28277
Eu31400 [X]Bipol aff disord, curr epis sev depress, no psychot symp 23713
Eu31500 [X]Bipolar affect dis cur epi severe depres with psyc symp 4732
Eu31600 [X]Bipolar affective disorder, current episode mixed 44693
Eu31700 [X]Bipolar affective disorder, currently in remission 27584
Eu31800 [X]Bipolar affective disorder type I 104065
Eu31900 [X]Bipolar affective disorder type II 103915
Eu31911 [X]Bipolar II disorder 104051
Eu31y00 [X]Other bipolar affective disorders 53840
Eu31y11 [X]Bipolar II disorder 73924
Eu31y12 [X]Recurrent manic episodes 51032
Eu31z00 [X]Bipolar affective disorder, unspecified 33751
Eu32311 [X]Single episode of major depression and psychotic symptoms 24117
Eu32900 [X]Single major depr ep, severe with psych, psych in remiss 101054
Eu32A00 [X]Recurr major depr ep, severe with psych, psych in remiss 101153
Eu33300 [X]Recurrent depress disorder cur epi severe with psyc symp 47009
Eu33311 [X]Endogenous depression with psychotic symptoms 23731
Eu33316 [X]Recurrent severe episodes/reactive depressive psychosis 37764
Eu3z.11 [X]Affective psychosis NOS 31633
Eu44.14 [X]Hysterical psychosis 28168
Eu60100 [X]Schizoid personality disorder 38371
Eu84013 [X]Infantile psychosis 61304
Eu84111 [X]Atypical childhood psychosis 24062
Eu84312 [X]Disintegrative psychosis 62222
Eu84314 [X]Symbiotic psychosis 53848
Eu84512 [X]Schizoid disorder of childhood 59285
R20z.00 [D]Senility, without psychosis NOS 92341
SL93.00 Other antipsychotics/neuroleptics/tranquilliser poisoning 53277
ZRby100 Profile of mood states, bipolar 30282
ZRhi.00 Rust inventory of schizotypal cognitions 93192
ZS7C611 Schizophrenic language 57376
ZV11000 [V]Personal history of schizophrenia 22104
ZV11112 [V]Personal history of manic-depressive psychosis 22080


To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH1093/version/2389/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH1093/version/2389/detail/?format=json
R Package

# Download here


# Connect to API

client = connect_to_API(public=TRUE)

# Get details of phenotype

details = get_phenotype_detail_by_version('PH1093', '2389', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH1093/version/2389/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH1093/version/2389/export/codes/?format=json
CSV site_root/phenotypes/PH1093/version/2389/export/codes/
R Package

# Download here


# Connect to API

client = connect_to_API(public=TRUE)

# Get codelists of phenotype

codelists = get_phenotype_code_list('PH1093', '2389', api_client=client)

Version History

Name Owner Publish date
2389 Psychoses - Elixhauser primary care coldeaa 2023-02-14 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

Print - Print page.