Alcohol use

A. John, S. Rees

PH1107 / 2435 Clinical-Coded Phenotype

  1. Overview

    Phenotype Type
    Disease or syndrome
    Sex
    Both
    Valid Event Date Range
    No data
    Coding System
    ICD10 codesRead codes v2
    Data Sources
    No data
    Collections
    Adolescent Data Platform (ADP)DATAMINDPhenotype Library
    Tags
    No data
  2. Definition

    Alcohol use

    Codes denoting alcohol use, including diagnoses, symptoms, observations, medications, behaviours, referrals and contacts with other services. This list contains prescriptions relevant to treatment for alcohol use disorder (disulfiram and acamprosate) as almost all recipients were found to have a history of alcohol use (Rees et. al., 2022); and excludes those used primarily for pain management. Codes requiring an associated value of units relating to alcohol consumption volumes are excluded, as these do not confidently denote alcohol use disorder on their own.  

    These code lists are based on validated, published and comparable lists (Rees et. al., 2022; DelPozo-Banos et. al., 2018; Kim et. al., 2017; NHS, 2018; NHS, 2019; Syed et. al., 2018; Walsh et. al., 2018) and reviewed by a clinician in the study team (Prof Ann John). 

    References

    Kim, Y. G., Baltabekova, A. Z., Zhiyenbay, E. E., Aksambayeva, A. S., Shagyrova, Z. S., Khannanov, R., ... & Shustov, A. V. (2017). Recombinant Vaccinia virus-coded interferon inhibitor B18R: Expression, refolding and a use in a mammalian expression system with a RNA-vector. PLoS One, 12(12), e0189308. 

    NHS National Services Scotland (2018). Alcohol-related hospital statistics Scotland 2017/18. 

    NHS National Services Scotland (2019). Drug-related hospital statistics Scotland 2017/18. 

    Rees, S., Watkins, A., Keauffling, J., & John, A. (2022). Incidence, Mortality and Survival in Young People with Co-Occurring Mental Disorders and Substance Use: A Retrospective Linked Routine Data Study in Wales. Clinical Epidemiology, 14, 21 

    Syed, S., Gilbert, R., & Wolpert, M. (2018). Parental alcohol misuse and the impact on children: a rapid evidence review of service presentations and interventions. 

    Walsh E, Jones R, Cox S. (2018). Data mining Wales: the annual profile for substance misuse 2017–18.

  3. Implementation

    Implementation

    No data
  4. Clinical Code List

  5. Publication

    • Rees, S., Watkins, A., Keauffling, J., & John, A. (2022). Incidence, Mortality and Survival in Young People with Co-Occurring Mental Disorders and Substance Use: A Retrospective Linked Routine D

    Citation Example

    A. John, S. Rees. PH1107 / 2435 - Alcohol use. Phenotype Library [Online]. 12 September 2023. Available from: http://phenotypes.healthdatagateway.org/phenotypes/PH1107/version/2435/detail/. [Accessed 15 June 2024]

  6. API

    To Export Phenotype Details:

    FormatAPI
    JSON site_root/api/v1/phenotypes/PH1107/version/2435/detail/?format=json
    R Package

    # Download here

    library(ConceptLibraryClient)


    # Connect to API

    client = ConceptLibraryClient::Connection$new(public=TRUE)


    # Get details of phenotype

    phenotype_details = client$phenotypes$get_detail(
     'PH1107',
     version_id=2435
    )

    Py Package

    # Download here

    from pyconceptlibraryclient import Client


    # Connect to API

    client = Client(public=True)


    # Get codelist of phenotype

    phenotype_codelist = client.phenotypes.get_detail(
     'PH1107',
     version_id=2435
    )

    To Export Phenotype Code List:

    FormatAPI
    JSON site_root/api/v1/phenotypes/PH1107/version/2435/export/codes/?format=json
    CSV site_root/phenotypes/PH1107/version/2435/export/codes/
    R Package

    # Download here

    library(ConceptLibraryClient)


    # Connect to API

    client = ConceptLibraryClient::Connection$new(public=TRUE)


    # Get codelist of phenotype

    phenotype_codelist = client$phenotypes$get_codelist(
     'PH1107',
     version_id=2435
    )

    Py Package

    # Download here

    from pyconceptlibraryclient import Client


    # Connect to API

    client = Client(public=True)


    # Get codelist of phenotype

    phenotype_codelist = client.phenotypes.get_codelist(
     'PH1107',
     version_id=2435
    )

  7. Version History

    Version IDNameOwnerPublish date
    2435 Alcohol use delpozom2023-09-12currently shown