Alcohol use
A. John, S. Rees
PH1107 / 2435 Clinical-Coded Phenotype
Overview
Phenotype TypeDisease or syndromeSexBothValid Event Date RangeNo dataCoding SystemICD10 codesRead codes v2Data SourcesNo dataCollectionsAdolescent Data Platform (ADP)DATAMINDPhenotype LibraryTagsNo dataDefinition
Alcohol use
Codes denoting alcohol use, including diagnoses, symptoms, observations, medications, behaviours, referrals and contacts with other services. This list contains prescriptions relevant to treatment for alcohol use disorder (disulfiram and acamprosate) as almost all recipients were found to have a history of alcohol use (Rees et. al., 2022); and excludes those used primarily for pain management. Codes requiring an associated value of units relating to alcohol consumption volumes are excluded, as these do not confidently denote alcohol use disorder on their own.
These code lists are based on validated, published and comparable lists (Rees et. al., 2022; DelPozo-Banos et. al., 2018; Kim et. al., 2017; NHS, 2018; NHS, 2019; Syed et. al., 2018; Walsh et. al., 2018) and reviewed by a clinician in the study team (Prof Ann John).
References
Kim, Y. G., Baltabekova, A. Z., Zhiyenbay, E. E., Aksambayeva, A. S., Shagyrova, Z. S., Khannanov, R., ... & Shustov, A. V. (2017). Recombinant Vaccinia virus-coded interferon inhibitor B18R: Expression, refolding and a use in a mammalian expression system with a RNA-vector. PLoS One, 12(12), e0189308.
NHS National Services Scotland (2018). Alcohol-related hospital statistics Scotland 2017/18.
NHS National Services Scotland (2019). Drug-related hospital statistics Scotland 2017/18.
Rees, S., Watkins, A., Keauffling, J., & John, A. (2022). Incidence, Mortality and Survival in Young People with Co-Occurring Mental Disorders and Substance Use: A Retrospective Linked Routine Data Study in Wales. Clinical Epidemiology, 14, 21
Syed, S., Gilbert, R., & Wolpert, M. (2018). Parental alcohol misuse and the impact on children: a rapid evidence review of service presentations and interventions.
Walsh E, Jones R, Cox S. (2018). Data mining Wales: the annual profile for substance misuse 2017–18.
Implementation
No dataImplementation
Clinical Code List
PUBLISHED - 195 Codes
PUBLISHED - 79 Codes
Publication
Rees, S., Watkins, A., Keauffling, J., & John, A. (2022). Incidence, Mortality and Survival in Young People with Co-Occurring Mental Disorders and Substance Use: A Retrospective Linked Routine D
Citation Example
A. John, S. Rees. PH1107 / 2435 - Alcohol use. Phenotype Library [Online]. 12 September 2023. Available from: http://phenotypes.healthdatagateway.org/phenotypes/PH1107/version/2435/detail/. [Accessed 18 October 2024]
API
To Export Phenotype Details:
Format API JSON site_root/api/v1/phenotypes/PH1107/version/2435/detail/?format=json R Package library(ConceptLibraryClient)
# Connect to API
client = ConceptLibraryClient::Connection$new(public=TRUE)
# Get details of phenotype
phenotype_details = client$phenotypes$get_detail(
'PH1107',
version_id=2435
)Py Package from pyconceptlibraryclient import Client
# Connect to API
client = Client(public=True)
# Get codelist of phenotype
phenotype_codelist = client.phenotypes.get_detail(
'PH1107',
version_id=2435
)To Export Phenotype Code List:
Format API JSON site_root/api/v1/phenotypes/PH1107/version/2435/export/codes/?format=json CSV site_root/phenotypes/PH1107/version/2435/export/codes/ R Package library(ConceptLibraryClient)
# Connect to API
client = ConceptLibraryClient::Connection$new(public=TRUE)
# Get codelist of phenotype
phenotype_codelist = client$phenotypes$get_codelist(
'PH1107',
version_id=2435
)Py Package from pyconceptlibraryclient import Client
# Connect to API
client = Client(public=True)
# Get codelist of phenotype
phenotype_codelist = client.phenotypes.get_codelist(
'PH1107',
version_id=2435
)Version History