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Autoimmune liver disease

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH111
Version ID
222
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Autoimmune liver disease' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. 'Autoimmune liver disease' diagnosis or history of diagnosis or procedure during a consultation

OR Secondary care

  1. ALL diagnoses of 'Autoimmune liver disease' or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 4
Code Description Disease Medcode Category
J614111 Autoimmune chronic active hepatitis Autoimmune liver disease 7957.0 Diagnosis of Autoimmune liver disease
J616000 Primary biliary cirrhosis Autoimmune liver disease 5638.0 Diagnosis of Autoimmune liver disease
J63B.00 Autoimmune hepatitis Autoimmune liver disease 18652.0 Diagnosis of Autoimmune liver disease
J661700 Primary sclerosing cholangitis Autoimmune liver disease 15425.0 Diagnosis of Autoimmune liver disease
Rows: 4
Code Description Disease ReadcodeDescr Readcode
15425.0 Diagnosis of Autoimmune liver disease Autoimmune liver disease Primary sclerosing cholangitis J661700
18652.0 Diagnosis of Autoimmune liver disease Autoimmune liver disease Autoimmune hepatitis J63B.00
5638.0 Diagnosis of Autoimmune liver disease Autoimmune liver disease Primary biliary cirrhosis J616000
7957.0 Diagnosis of Autoimmune liver disease Autoimmune liver disease Autoimmune chronic active hepatitis J614111
Rows: 2
Code Description Disease Category
K74.3 Primary biliary cirrhosis Autoimmune liver disease Diagnosis of Autoimmune liver disease
K75.4 Autoimmune hepatitis Autoimmune liver disease Diagnosis of Autoimmune liver disease

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH111/version/222/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH111/version/222/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH111', '222', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH111/version/222/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH111/version/222/export/codes/?format=json
CSV site_root/phenotypes/PH111/version/222/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH111', '222', api_client=client)

Version History

Version
ID
Name Owner Publish date
222 Autoimmune liver disease ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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