At the specified date, a patient is defined as having had 'Bacterial Diseases (excl TB)' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Secondary care
Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3
| Code | Description | Disease | Category |
|---|---|---|---|
| A00 | Cholera | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A01 | Typhoid and paratyphoid fevers | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A02 | Other salmonella infections | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A03 | Shigellosis | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A04 | Other bacterial intestinal infections | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A05 | Other bacterial foodborne intoxications, not elsewhere classified | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A20 | Plague | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A21 | Tularaemia | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A22 | Anthrax | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A23 | Brucellosis | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A24 | Glanders and melioidosis | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A25 | Rat-bite fevers | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A26 | Erysipeloid | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A27 | Leptospirosis | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A28 | Other zoonotic bacterial diseases, not elsewhere classified | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A30 | Leprosy [Hansen's disease] | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A31 | Infection due to other mycobacteria | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A32 | Listeriosis | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A35 | Other tetanus | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A36 | Diphtheria | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A37 | Whooping cough | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A38 | Scarlet fever | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A39 | Meningococcal infection | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A40 | Streptococcal sepsis | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A41.0 | Sepsis due to Staphylococcus aureus | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A41.1 | Sepsis due to other specified staphylococcus | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A41.2 | Sepsis due to unspecified staphylococcus | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A41.3 | Sepsis due to Haemophilus influenzae | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A41.4 | Sepsis due to anaerobes | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A41.5 | Sepsis due to other Gram-negative organisms | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A42 | Actinomycosis | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A43 | Nocardiosis | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A44 | Bartonellosis | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A46 | Erysipelas | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A48 | Other bacterial diseases, not elsewhere classified | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A49 | Bacterial infection of unspecified site | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A50 | Congenital syphilis | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A51 | Early syphilis | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A52 | Late syphilis | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A53 | Other and unspecified syphilis | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A54 | Gonococcal infection | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A55 | Chlamydial lymphogranuloma (venereum) | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A56 | Other sexually transmitted chlamydial diseases | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A57 | Chancroid | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A58 | Granuloma inguinale | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A65 | Nonvenereal syphilis | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A66 | Yaws | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A67 | Pinta [carate] | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A68 | Relapsing fevers | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A69 | Other spirochaetal infections | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A70 | Chlamydia psittaci infection | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A71 | Trachoma | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A74 | Other diseases caused by chlamydiae | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A75 | Typhus fever | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A77 | Spotted fever [tick-borne rickettsioses] | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A78 | Q fever | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| A79 | Other rickettsioses | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| B20.1 | HIV disease resulting in other bacterial infections | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| B92 | Sequelae of leprosy | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| B94.0 | Sequelae of trachoma | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| B95 | Streptococcus and staphylococcus as the cause of diseases classified to other chapters | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| B96 | Other specified bacterial agents as the cause of diseases classified to other chapters | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| B98.0 | Helicobacter pylori [H.pylori] as the cause of diseases classified to other chapters | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| B98.1 | Vibrio vulnificus as the cause of diseases classified to other chapters | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| G00 | Bacterial meningitis, not elsewhere classified | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| G01 | Meningitis in bacterial diseases classified elsewhere | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| G04.2 | Bacterial meningoencephalitis and meningomyelitis, not elsewhere classified | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| G05.0 | Encephalitis, myelitis and encephalomyelitis in bacterial diseases classified elsewhere | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| H62.0 | Otitis externa in bacterial diseases classified elsewhere | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| H67.0 | Otitis media in bacterial diseases classified elsewhere | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| I00 | Rheumatic fever without mention of heart involvement | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| I01 | Rheumatic fever with heart involvement | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| I02 | Rheumatic chorea | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| I05 | Rheumatic mitral valve diseases | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| I06 | Rheumatic aortic valve diseases | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| I07 | Rheumatic tricuspid valve diseases | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| I09 | Other rheumatic heart diseases | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| I32.0 | Pericarditis in bacterial diseases classified elsewhere | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| I41.0 | Myocarditis in bacterial diseases classified elsewhere | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| I98.0 | Cardiovascular syphilis | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| J02.0 | Streptococcal pharyngitis | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| J03.0 | Streptococcal tonsillitis | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| J13 | Pneumonia due to Streptococcus pneumoniae | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| J14 | Pneumonia due to Haemophilus influenzae | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| J15 | Bacterial pneumonia, not elsewhere classified | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| J16.0 | Chlamydial pneumonia | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| J17.0 | Pneumonia in bacterial diseases classified elsewhere | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| J20.0 | Acute bronchitis due to Mycoplasma pneumoniae | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| J20.1 | Acute bronchitis due to Haemophilus influenzae | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| J20.2 | Acute bronchitis due to streptococcus | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| J34.0 | Abscess, furuncle and carbuncle of nose | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| J36 | Peritonsillar abscess | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| J39.0 | Retropharyngeal and parapharyngeal abscess | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| J39.1 | Other abscess of pharynx | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| J86 | Pyothorax | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| K61 | Abscess of anal and rectal regions | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| K63.0 | Abscess of intestine | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| K67.0 | Chlamydial peritonitis | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| K67.1 | Gonococcal peritonitis | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| L00 | Staphylococcal scalded skin syndrome | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| L01 | Impetigo | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| L02 | Cutaneous abscess, furuncle and carbuncle | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| L03 | Cellulitis | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| L05.0 | Pilonidal cyst with abscess | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| L08.1 | Erythrasma | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| M00.0 | Staphylococcal arthritis and polyarthritis | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| M00.1 | Pneumococcal arthritis and polyarthritis | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| M00.2 | Other streptococcal arthritis and polyarthritis | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| M00.8 | Arthritis and polyarthritis due to other specified bacterial agents | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| M00.9 | Pyogenic arthritis, unspecified | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| M01.0 | Meningococcal arthritis | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| M01.2 | Arthritis in Lyme disease | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| M01.3 | Arthritis in other bacterial diseases classified elsewhere | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| M03.0 | Postmeningococcal arthritis | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| M03.1 | Postinfective arthropathy in syphilis | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| M49.1 | Brucella spondylitis | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| M49.2 | Enterobacterial spondylitis | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| M63.0 | Myositis in bacterial diseases classified elsewhere | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| M65.0 | Abscess of tendon sheath | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| M65.1 | Other infective (teno)synovitis | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| M68.0 | Synovitis and tenosynovitis in bacterial diseases classified elsewhere | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| M71.0 | Abscess of bursa | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| M71.1 | Other infective bursitis | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| M72.6 | Necrotizing fasciitis | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| M73.1 | Syphilitic bursitis | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| M86 | Osteomyelitis | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| M90.1 | Periostitis in other infectious diseases classified elsewhere | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| M90.2 | Osteopathy in other infectious diseases classified elsewhere | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| N13.6 | Pyonephrosis | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| N15.1 | Renal and perinephric abscess | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| N29.0 | Late syphilis of kidney | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| N39.0 | Urinary tract infection, site not specified | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| N41.0 | Acute prostatitis | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| N41.2 | Abscess of prostate | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| N41.3 | Prostatocystitis | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| N43.1 | Infected hydrocele | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| N45 | Orchitis and epididymitis | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| N70 | Salpingitis and oophoritis | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| N71 | Inflammatory disease of uterus, except cervix | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| N72 | Inflammatory disease of cervix uteri | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| N73 | Other female pelvic inflammatory diseases | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| N74.3 | Female gonococcal pelvic inflammatory disease | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| N74.4 | Female chlamydial pelvic inflammatory disease | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| N74.8 | Female pelvic inflammatory disorders in other diseases classified elsewhere | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| N75.1 | Abscess of Bartholin's gland | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| P23.1 | Congenital pneumonia due to Chlamydia | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| P23.2 | Congenital pneumonia due to staphylococcus | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| P23.3 | Congenital pneumonia due to streptococcus, group B | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| P23.4 | Congenital pneumonia due to Escherichia coli | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| P23.5 | Congenital pneumonia due to Pseudomonas | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| P23.6 | Congenital pneumonia due to other bacterial agents | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| P36 | Bacterial sepsis of newborn | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
| P37.2 | Neonatal (disseminated) listeriosis | Bacterial Diseases (excl TB) | Diagnosis of Bacterial Diseases (excl TB) |
To Export Phenotype Details:
| Format | API |
|---|---|
| XML | site_root/api/v1/public/phenotypes/PH117/version/234/detail/?format=xml |
| JSON | site_root/api/v1/public/phenotypes/PH117/version/234/detail/?format=json |
| R Package |
|
To Export Phenotype Code List:
| Format | API |
|---|---|
| XML | site_root/api/v1/public/phenotypes/PH117/version/234/export/codes/?format=xml |
| JSON | site_root/api/v1/public/phenotypes/PH117/version/234/export/codes/?format=json |
| CSV | site_root/phenotypes/PH117/version/234/export/codes/ |
| R Package |
|
| Version ID |
Name | Owner | Publish date | |
|---|---|---|---|---|
| 234 | Bacterial Diseases (excl TB) | ieuan.scanlon | 2021-10-06 | currently shown |
Export - export all codes into a csv file/JSON/XML for the current phenotype version.
Print - Print page.