Print

Benign neoplasm of colon, rectum, anus and anal canal

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH121
Version ID
242
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had Benign neoplasm of colon, rectum, anus and anal canal IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. Benign neoplasm of colon, rectum, anus and anal canal diagnosis or history of diagnosis during a consultation

OR Secondary care

  1. ALL diagnoses of Benign neoplasm of colon, rectum, anus and anal canal or history of diagnosis during a hospitalization

Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 32
Code Description Disease Medcode Category
771G400 Colonoscopic polypectomy Benign neoplasm of colon, rectum, anus and anal canal 6828.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal
7722.11 Open operation on rectal polyp Benign neoplasm of colon, rectum, anus and anal canal 8825.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal
7722.12 Open polypectomy of rectum Benign neoplasm of colon, rectum, anus and anal canal 6891.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal
7726111.0 Peranal excision of rectal polyp Benign neoplasm of colon, rectum, anus and anal canal 12298.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal
7726112.0 Peranal polypectomy of rectum Benign neoplasm of colon, rectum, anus and anal canal 4961.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal
7726212.0 Peranal destruction of rectal polyp Benign neoplasm of colon, rectum, anus and anal canal 39965.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal
7731200.0 Excision of anal polyp Benign neoplasm of colon, rectum, anus and anal canal 7359.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal
B713.00 Benign neoplasm of colon Benign neoplasm of colon, rectum, anus and anal canal 15072.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal
B713.11 Colon polyp Benign neoplasm of colon, rectum, anus and anal canal 2922.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal
B713000 Benign neoplasm of hepatic flexure of colon Benign neoplasm of colon, rectum, anus and anal canal 29916.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal
B713100 Benign neoplasm of transverse colon Benign neoplasm of colon, rectum, anus and anal canal 55538.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal
B713200 Benign neoplasm of descending colon Benign neoplasm of colon, rectum, anus and anal canal 47964.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal
B713300 Benign neoplasm of sigmoid colon Benign neoplasm of colon, rectum, anus and anal canal 27577.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal
B713400 Benign neoplasm of caecum Benign neoplasm of colon, rectum, anus and anal canal 27402.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal
B713500 Benign neoplasm of appendix Benign neoplasm of colon, rectum, anus and anal canal 41880.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal
B713600 Benign neoplasm of ascending colon Benign neoplasm of colon, rectum, anus and anal canal 41898.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal
B713700 Benign neoplasm of splenic flexure of colon Benign neoplasm of colon, rectum, anus and anal canal 42868.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal
B713900 Benign neoplasm of ileocaecal valve Benign neoplasm of colon, rectum, anus and anal canal 69106.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal
B713z00 Benign neoplasm of colon NOS Benign neoplasm of colon, rectum, anus and anal canal 25999.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal
B714.00 Benign neoplasm of rectum and anal canal Benign neoplasm of colon, rectum, anus and anal canal 25862.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal
B714000 Benign neoplasm of rectosigmoid junction Benign neoplasm of colon, rectum, anus and anal canal 27925.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal
B714100 Benign neoplasm of rectum Benign neoplasm of colon, rectum, anus and anal canal 33345.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal
B714111 Benign papilloma rectum Benign neoplasm of colon, rectum, anus and anal canal 40656.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal
B714200 Benign neoplasm of anal canal Benign neoplasm of colon, rectum, anus and anal canal 15062.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal
B714300 Benign neoplasm of anus NOS Benign neoplasm of colon, rectum, anus and anal canal 41672.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal
B714z00 Benign neoplasm of rectum or anal canal NOS Benign neoplasm of colon, rectum, anus and anal canal 61560.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal
J570.00 Anal and rectal polyp Benign neoplasm of colon, rectum, anus and anal canal 5975.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal
J570000 Anal polyp Benign neoplasm of colon, rectum, anus and anal canal 2700.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal
J570100 Rectal polyp Benign neoplasm of colon, rectum, anus and anal canal 2207.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal
J570z00 Anal and rectal polyp NOS Benign neoplasm of colon, rectum, anus and anal canal 57584.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal
J578.00 Colonic polyp Benign neoplasm of colon, rectum, anus and anal canal 11340.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal
J578.11 Polyp of colon Benign neoplasm of colon, rectum, anus and anal canal 63594.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal
Rows: 32
Code Description Disease ReadcodeDescr Readcode
11340.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal Benign neoplasm of colon, rectum, anus and anal canal Colonic polyp J578.00
12298.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal Benign neoplasm of colon, rectum, anus and anal canal Peranal excision of rectal polyp 7726111.0
15062.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal Benign neoplasm of colon, rectum, anus and anal canal Benign neoplasm of anal canal B714200
15072.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal Benign neoplasm of colon, rectum, anus and anal canal Benign neoplasm of colon B713.00
2207.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal Benign neoplasm of colon, rectum, anus and anal canal Rectal polyp J570100
25862.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal Benign neoplasm of colon, rectum, anus and anal canal Benign neoplasm of rectum and anal canal B714.00
25999.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal Benign neoplasm of colon, rectum, anus and anal canal Benign neoplasm of colon NOS B713z00
2700.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal Benign neoplasm of colon, rectum, anus and anal canal Anal polyp J570000
27402.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal Benign neoplasm of colon, rectum, anus and anal canal Benign neoplasm of caecum B713400
27577.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal Benign neoplasm of colon, rectum, anus and anal canal Benign neoplasm of sigmoid colon B713300
27925.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal Benign neoplasm of colon, rectum, anus and anal canal Benign neoplasm of rectosigmoid junction B714000
2922.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal Benign neoplasm of colon, rectum, anus and anal canal Colon polyp B713.11
29916.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal Benign neoplasm of colon, rectum, anus and anal canal Benign neoplasm of hepatic flexure of colon B713000
33345.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal Benign neoplasm of colon, rectum, anus and anal canal Benign neoplasm of rectum B714100
39965.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal Benign neoplasm of colon, rectum, anus and anal canal Peranal destruction of rectal polyp 7726212.0
40656.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal Benign neoplasm of colon, rectum, anus and anal canal Benign papilloma rectum B714111
41672.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal Benign neoplasm of colon, rectum, anus and anal canal Benign neoplasm of anus NOS B714300
41880.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal Benign neoplasm of colon, rectum, anus and anal canal Benign neoplasm of appendix B713500
41898.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal Benign neoplasm of colon, rectum, anus and anal canal Benign neoplasm of ascending colon B713600
42868.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal Benign neoplasm of colon, rectum, anus and anal canal Benign neoplasm of splenic flexure of colon B713700
47964.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal Benign neoplasm of colon, rectum, anus and anal canal Benign neoplasm of descending colon B713200
4961.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal Benign neoplasm of colon, rectum, anus and anal canal Peranal polypectomy of rectum 7726112.0
55538.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal Benign neoplasm of colon, rectum, anus and anal canal Benign neoplasm of transverse colon B713100
57584.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal Benign neoplasm of colon, rectum, anus and anal canal Anal and rectal polyp NOS J570z00
5975.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal Benign neoplasm of colon, rectum, anus and anal canal Anal and rectal polyp J570.00
61560.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal Benign neoplasm of colon, rectum, anus and anal canal Benign neoplasm of rectum or anal canal NOS B714z00
63594.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal Benign neoplasm of colon, rectum, anus and anal canal Polyp of colon J578.11
6828.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal Benign neoplasm of colon, rectum, anus and anal canal Colonoscopic polypectomy 771G400
6891.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal Benign neoplasm of colon, rectum, anus and anal canal Open polypectomy of rectum 7722.12
69106.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal Benign neoplasm of colon, rectum, anus and anal canal Benign neoplasm of ileocaecal valve B713900
7359.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal Benign neoplasm of colon, rectum, anus and anal canal Excision of anal polyp 7731200.0
8825.0 Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal Benign neoplasm of colon, rectum, anus and anal canal Open operation on rectal polyp 7722.11
Rows: 4
Code Description Disease Category
D12 Benign neoplasm of colon, rectum, anus and anal canal Benign neoplasm of colon, rectum, anus and anal canal Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal
K62.0 Anal polyp Benign neoplasm of colon, rectum, anus and anal canal Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal
K62.1 Rectal polyp Benign neoplasm of colon, rectum, anus and anal canal Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal
K63.5 Polyp of colon Benign neoplasm of colon, rectum, anus and anal canal Diagnosis of Benign neoplasm of colon, rectum, anus and anal canal

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH121/version/242/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH121/version/242/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH121', '242', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH121/version/242/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH121/version/242/export/codes/?format=json
CSV site_root/phenotypes/PH121/version/242/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH121', '242', api_client=client)

Version History

Version
ID
Name Owner Publish date
242 Benign neoplasm of colon, rectum, anus and anal canal ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

Print - Print page.