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Benign neoplasm of stomach and duodenum

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH123
Version ID
246
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had Benign neoplasm of stomach and duodenum IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. Benign neoplasm of stomach and duodenum diagnosis or history of diagnosis during a consultation

OR Secondary care

  1. ALL diagnoses of Benign neoplasm of stomach and duodenum or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 20
Code Description Disease Medcode Category
7612000.0 Open excision of polyp of stomach Benign neoplasm of stomach and duodenum 31943.0 Diagnosis of Benign neoplasm of stomach and duodenum
B711.00 Benign neoplasm of stomach Benign neoplasm of stomach and duodenum 2151.0 Diagnosis of Benign neoplasm of stomach and duodenum
B711.11 Gastric polyp Benign neoplasm of stomach and duodenum 9930.0 Diagnosis of Benign neoplasm of stomach and duodenum
B711000 Benign neoplasm of stomach cardia Benign neoplasm of stomach and duodenum 70651.0 Diagnosis of Benign neoplasm of stomach and duodenum
B711100 Benign neoplasm of pylorus of stomach Benign neoplasm of stomach and duodenum 62625.0 Diagnosis of Benign neoplasm of stomach and duodenum
B711200 Benign neoplasm of fundus of stomach Benign neoplasm of stomach and duodenum 52425.0 Diagnosis of Benign neoplasm of stomach and duodenum
B711300 Benign neoplasm of body of stomach Benign neoplasm of stomach and duodenum 62798.0 Diagnosis of Benign neoplasm of stomach and duodenum
B711400 Benign neoplasm of pyloric antrum Benign neoplasm of stomach and duodenum 57870.0 Diagnosis of Benign neoplasm of stomach and duodenum
B711z00 Benign neoplasm of stomach NOS Benign neoplasm of stomach and duodenum 54667.0 Diagnosis of Benign neoplasm of stomach and duodenum
B712.00 Benign neoplasm of small intestine and duodenum Benign neoplasm of stomach and duodenum 15203.0 Diagnosis of Benign neoplasm of stomach and duodenum
B712000 Benign neoplasm of duodenum Benign neoplasm of stomach and duodenum 48001.0 Diagnosis of Benign neoplasm of stomach and duodenum
B712011 Duodenal polyp Benign neoplasm of stomach and duodenum 14949.0 Diagnosis of Benign neoplasm of stomach and duodenum
B712100 Benign neoplasm of jejunum Benign neoplasm of stomach and duodenum 70965.0 Diagnosis of Benign neoplasm of stomach and duodenum
B712111 Jejunal polyp Benign neoplasm of stomach and duodenum 43341.0 Diagnosis of Benign neoplasm of stomach and duodenum
B712200 Benign neoplasm of ileum Benign neoplasm of stomach and duodenum 70275.0 Diagnosis of Benign neoplasm of stomach and duodenum
B712z00 Benign neoplasm of small intestine or duodenum NOS Benign neoplasm of stomach and duodenum 95911.0 Diagnosis of Benign neoplasm of stomach and duodenum
J177.00 Gastric polyp Benign neoplasm of stomach and duodenum 25671.0 Diagnosis of Benign neoplasm of stomach and duodenum
J177.11 Polyp of stomach Benign neoplasm of stomach and duodenum 19143.0 Diagnosis of Benign neoplasm of stomach and duodenum
J178.00 Duodenal polyp Benign neoplasm of stomach and duodenum 51733.0 Diagnosis of Benign neoplasm of stomach and duodenum
J178.11 Polyp of duodenum Benign neoplasm of stomach and duodenum 41334.0 Diagnosis of Benign neoplasm of stomach and duodenum
Rows: 20
Code Description Disease ReadcodeDescr Readcode
14949.0 Diagnosis of Benign neoplasm of stomach and duodenum Benign neoplasm of stomach and duodenum Duodenal polyp B712011
15203.0 Diagnosis of Benign neoplasm of stomach and duodenum Benign neoplasm of stomach and duodenum Benign neoplasm of small intestine and duodenum B712.00
19143.0 Diagnosis of Benign neoplasm of stomach and duodenum Benign neoplasm of stomach and duodenum Polyp of stomach J177.11
2151.0 Diagnosis of Benign neoplasm of stomach and duodenum Benign neoplasm of stomach and duodenum Benign neoplasm of stomach B711.00
25671.0 Diagnosis of Benign neoplasm of stomach and duodenum Benign neoplasm of stomach and duodenum Gastric polyp J177.00
31943.0 Diagnosis of Benign neoplasm of stomach and duodenum Benign neoplasm of stomach and duodenum Open excision of polyp of stomach 7612000.0
41334.0 Diagnosis of Benign neoplasm of stomach and duodenum Benign neoplasm of stomach and duodenum Polyp of duodenum J178.11
43341.0 Diagnosis of Benign neoplasm of stomach and duodenum Benign neoplasm of stomach and duodenum Jejunal polyp B712111
48001.0 Diagnosis of Benign neoplasm of stomach and duodenum Benign neoplasm of stomach and duodenum Benign neoplasm of duodenum B712000
51733.0 Diagnosis of Benign neoplasm of stomach and duodenum Benign neoplasm of stomach and duodenum Duodenal polyp J178.00
52425.0 Diagnosis of Benign neoplasm of stomach and duodenum Benign neoplasm of stomach and duodenum Benign neoplasm of fundus of stomach B711200
54667.0 Diagnosis of Benign neoplasm of stomach and duodenum Benign neoplasm of stomach and duodenum Benign neoplasm of stomach NOS B711z00
57870.0 Diagnosis of Benign neoplasm of stomach and duodenum Benign neoplasm of stomach and duodenum Benign neoplasm of pyloric antrum B711400
62625.0 Diagnosis of Benign neoplasm of stomach and duodenum Benign neoplasm of stomach and duodenum Benign neoplasm of pylorus of stomach B711100
62798.0 Diagnosis of Benign neoplasm of stomach and duodenum Benign neoplasm of stomach and duodenum Benign neoplasm of body of stomach B711300
70275.0 Diagnosis of Benign neoplasm of stomach and duodenum Benign neoplasm of stomach and duodenum Benign neoplasm of ileum B712200
70651.0 Diagnosis of Benign neoplasm of stomach and duodenum Benign neoplasm of stomach and duodenum Benign neoplasm of stomach cardia B711000
70965.0 Diagnosis of Benign neoplasm of stomach and duodenum Benign neoplasm of stomach and duodenum Benign neoplasm of jejunum B712100
95911.0 Diagnosis of Benign neoplasm of stomach and duodenum Benign neoplasm of stomach and duodenum Benign neoplasm of small intestine or duodenum NOS B712z00
9930.0 Diagnosis of Benign neoplasm of stomach and duodenum Benign neoplasm of stomach and duodenum Gastric polyp B711.11
Rows: 4
Code Description Disease Category
D13.1 Benign neoplasm: Stomach Benign neoplasm of stomach and duodenum Diagnosis of Benign neoplasm of stomach and duodenum
D13.2 Benign neoplasm: Duodenum Benign neoplasm of stomach and duodenum Diagnosis of Benign neoplasm of stomach and duodenum
D13.3 Benign neoplasm: Other and unspecified parts of small intestine Benign neoplasm of stomach and duodenum Diagnosis of Benign neoplasm of stomach and duodenum
K31.7 Polyp of stomach and duodenum Benign neoplasm of stomach and duodenum Diagnosis of Benign neoplasm of stomach and duodenum

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH123/version/246/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH123/version/246/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH123', '246', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH123/version/246/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH123/version/246/export/codes/?format=json
CSV site_root/phenotypes/PH123/version/246/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH123', '246', api_client=client)

Version History

Version
ID
Name Owner Publish date
246 Benign neoplasm of stomach and duodenum ieuan.scanlon 2021-10-06 currently shown

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