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Benign neoplasm and polyp of uterus

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH124
Version ID
248
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had Benign neoplasm and polyp of uterus IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. Benign neoplasm and polyp of uterus diagnosis or history of diagnosis during a consultation

OR Secondary care

  1. ALL diagnoses of Benign neoplasm and polyp of uterus or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 13
Code Description Disease Medcode Category
7E0D311 Endoscopic endometrial polypectomy Benign neoplasm and polyp of uterus 29737.0 Diagnosis of Benign neoplasm and polyp of uterus
7E0D700 Endoscopic endometrial polypectomy Benign neoplasm and polyp of uterus 7789.0 Diagnosis of Benign neoplasm and polyp of uterus
B79..00 Other benign neoplasm of uterus Benign neoplasm and polyp of uterus 14960.0 Diagnosis of Benign neoplasm and polyp of uterus
B791.00 Benign neoplasm corpus uteri NEC Benign neoplasm and polyp of uterus 62383.0 Diagnosis of Benign neoplasm and polyp of uterus
B791000 Benign neoplasm of endometrium NEC Benign neoplasm and polyp of uterus 22609.0 Diagnosis of Benign neoplasm and polyp of uterus
B791100 Benign neoplasm of myometrium NEC Benign neoplasm and polyp of uterus 45735.0 Diagnosis of Benign neoplasm and polyp of uterus
B791200 Benign neoplasm of uterine fundus NEC Benign neoplasm and polyp of uterus 70785.0 Diagnosis of Benign neoplasm and polyp of uterus
B791z00 Benign neoplasm of corpus uteri NOS Benign neoplasm and polyp of uterus 66816.0 Diagnosis of Benign neoplasm and polyp of uterus
B79y.00 Benign neoplasm of other specified sites of uterus Benign neoplasm and polyp of uterus 66436.0 Diagnosis of Benign neoplasm and polyp of uterus
B79z.00 Benign neoplasm of uterus NOS Benign neoplasm and polyp of uterus 56515.0 Diagnosis of Benign neoplasm and polyp of uterus
ByuGB00 [X]Benign neoplasm of other parts of uterus Benign neoplasm and polyp of uterus 33859.0 Diagnosis of Benign neoplasm and polyp of uterus
K540.00 Polyp of the corpus uteri Benign neoplasm and polyp of uterus 2742.0 Diagnosis of Benign neoplasm and polyp of uterus
K540.11 Endometrial polyp Benign neoplasm and polyp of uterus 1269.0 Diagnosis of Benign neoplasm and polyp of uterus
Rows: 13
Code Description Disease ReadcodeDescr Readcode
1269.0 Diagnosis of Benign neoplasm and polyp of uterus Benign neoplasm and polyp of uterus Endometrial polyp K540.11
14960.0 Diagnosis of Benign neoplasm and polyp of uterus Benign neoplasm and polyp of uterus Other benign neoplasm of uterus B79..00
22609.0 Diagnosis of Benign neoplasm and polyp of uterus Benign neoplasm and polyp of uterus Benign neoplasm of endometrium NEC B791000
2742.0 Diagnosis of Benign neoplasm and polyp of uterus Benign neoplasm and polyp of uterus Polyp of the corpus uteri K540.00
29737.0 Diagnosis of Benign neoplasm and polyp of uterus Benign neoplasm and polyp of uterus Endoscopic endometrial polypectomy 7E0D311
33859.0 Diagnosis of Benign neoplasm and polyp of uterus Benign neoplasm and polyp of uterus [X]Benign neoplasm of other parts of uterus ByuGB00
45735.0 Diagnosis of Benign neoplasm and polyp of uterus Benign neoplasm and polyp of uterus Benign neoplasm of myometrium NEC B791100
56515.0 Diagnosis of Benign neoplasm and polyp of uterus Benign neoplasm and polyp of uterus Benign neoplasm of uterus NOS B79z.00
62383.0 Diagnosis of Benign neoplasm and polyp of uterus Benign neoplasm and polyp of uterus Benign neoplasm corpus uteri NEC B791.00
66436.0 Diagnosis of Benign neoplasm and polyp of uterus Benign neoplasm and polyp of uterus Benign neoplasm of other specified sites of uterus B79y.00
66816.0 Diagnosis of Benign neoplasm and polyp of uterus Benign neoplasm and polyp of uterus Benign neoplasm of corpus uteri NOS B791z00
70785.0 Diagnosis of Benign neoplasm and polyp of uterus Benign neoplasm and polyp of uterus Benign neoplasm of uterine fundus NEC B791200
7789.0 Diagnosis of Benign neoplasm and polyp of uterus Benign neoplasm and polyp of uterus Endoscopic endometrial polypectomy 7E0D700
Rows: 4
Code Description Disease Category
D26.1 Other benign neoplasm: Corpus uteri Benign neoplasm and polyp of uterus Diagnosis of Benign neoplasm and polyp of uterus
D26.7 Other benign neoplasm: Other parts of uterus Benign neoplasm and polyp of uterus Diagnosis of Benign neoplasm and polyp of uterus
D26.9 Other benign neoplasm: Uterus, unspecified Benign neoplasm and polyp of uterus Diagnosis of Benign neoplasm and polyp of uterus
N84.0 Polyp of corpus uteri Benign neoplasm and polyp of uterus Diagnosis of Benign neoplasm and polyp of uterus

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH124/version/248/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH124/version/248/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH124', '248', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH124/version/248/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH124/version/248/export/codes/?format=json
CSV site_root/phenotypes/PH124/version/248/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH124', '248', api_client=client)

Version History

Version
ID
Name Owner Publish date
248 Benign neoplasm and polyp of uterus ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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