Phenotype Library | phenotype: Benign neoplasm and polyp of uterus

Benign neoplasm and polyp of uterus

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH124

Version ID

248

Type

Disease or Syndrome

Data Sources

CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

♀ Female ♂ Male

Agreement Date

2019-05-20

Coding system

Read codes v2 ICD10 codes Med codes

Collections

CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had Benign neoplasm and polyp of uterus IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

Benign neoplasm and polyp of uterus diagnosis or history of diagnosis during a consultation

OR Secondary care

ALL diagnoses of Benign neoplasm and polyp of uterus or history of diagnosis during a hospitalization

Implementation

PhenoFlow Implementation:

https://kclhi.org/phenoflow/phenotype/download/364

Publications

Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

CSV

JSON

XML

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C1035/3209 Benign neoplasm and polyp of uterus - Primary care - Read codes v2

Rows: 13

Code	Description	Disease	Medcode	Category
7E0D311	Endoscopic endometrial polypectomy	Benign neoplasm and polyp of uterus	29737.0	Diagnosis of Benign neoplasm and polyp of uterus
7E0D700	Endoscopic endometrial polypectomy	Benign neoplasm and polyp of uterus	7789.0	Diagnosis of Benign neoplasm and polyp of uterus
B79..00	Other benign neoplasm of uterus	Benign neoplasm and polyp of uterus	14960.0	Diagnosis of Benign neoplasm and polyp of uterus
B791.00	Benign neoplasm corpus uteri NEC	Benign neoplasm and polyp of uterus	62383.0	Diagnosis of Benign neoplasm and polyp of uterus
B791000	Benign neoplasm of endometrium NEC	Benign neoplasm and polyp of uterus	22609.0	Diagnosis of Benign neoplasm and polyp of uterus
B791100	Benign neoplasm of myometrium NEC	Benign neoplasm and polyp of uterus	45735.0	Diagnosis of Benign neoplasm and polyp of uterus
B791200	Benign neoplasm of uterine fundus NEC	Benign neoplasm and polyp of uterus	70785.0	Diagnosis of Benign neoplasm and polyp of uterus
B791z00	Benign neoplasm of corpus uteri NOS	Benign neoplasm and polyp of uterus	66816.0	Diagnosis of Benign neoplasm and polyp of uterus
B79y.00	Benign neoplasm of other specified sites of uterus	Benign neoplasm and polyp of uterus	66436.0	Diagnosis of Benign neoplasm and polyp of uterus
B79z.00	Benign neoplasm of uterus NOS	Benign neoplasm and polyp of uterus	56515.0	Diagnosis of Benign neoplasm and polyp of uterus
ByuGB00	[X]Benign neoplasm of other parts of uterus	Benign neoplasm and polyp of uterus	33859.0	Diagnosis of Benign neoplasm and polyp of uterus
K540.00	Polyp of the corpus uteri	Benign neoplasm and polyp of uterus	2742.0	Diagnosis of Benign neoplasm and polyp of uterus
K540.11	Endometrial polyp	Benign neoplasm and polyp of uterus	1269.0	Diagnosis of Benign neoplasm and polyp of uterus

C1036/3211 Benign neoplasm and polyp of uterus - Primary care - Med codes

Rows: 13

Code	Description	Disease	ReadcodeDescr	Readcode
1269.0	Diagnosis of Benign neoplasm and polyp of uterus	Benign neoplasm and polyp of uterus	Endometrial polyp	K540.11
14960.0	Diagnosis of Benign neoplasm and polyp of uterus	Benign neoplasm and polyp of uterus	Other benign neoplasm of uterus	B79..00
22609.0	Diagnosis of Benign neoplasm and polyp of uterus	Benign neoplasm and polyp of uterus	Benign neoplasm of endometrium NEC	B791000
2742.0	Diagnosis of Benign neoplasm and polyp of uterus	Benign neoplasm and polyp of uterus	Polyp of the corpus uteri	K540.00
29737.0	Diagnosis of Benign neoplasm and polyp of uterus	Benign neoplasm and polyp of uterus	Endoscopic endometrial polypectomy	7E0D311
33859.0	Diagnosis of Benign neoplasm and polyp of uterus	Benign neoplasm and polyp of uterus	[X]Benign neoplasm of other parts of uterus	ByuGB00
45735.0	Diagnosis of Benign neoplasm and polyp of uterus	Benign neoplasm and polyp of uterus	Benign neoplasm of myometrium NEC	B791100
56515.0	Diagnosis of Benign neoplasm and polyp of uterus	Benign neoplasm and polyp of uterus	Benign neoplasm of uterus NOS	B79z.00
62383.0	Diagnosis of Benign neoplasm and polyp of uterus	Benign neoplasm and polyp of uterus	Benign neoplasm corpus uteri NEC	B791.00
66436.0	Diagnosis of Benign neoplasm and polyp of uterus	Benign neoplasm and polyp of uterus	Benign neoplasm of other specified sites of uterus	B79y.00
66816.0	Diagnosis of Benign neoplasm and polyp of uterus	Benign neoplasm and polyp of uterus	Benign neoplasm of corpus uteri NOS	B791z00
70785.0	Diagnosis of Benign neoplasm and polyp of uterus	Benign neoplasm and polyp of uterus	Benign neoplasm of uterine fundus NEC	B791200
7789.0	Diagnosis of Benign neoplasm and polyp of uterus	Benign neoplasm and polyp of uterus	Endoscopic endometrial polypectomy	7E0D700

C1037/3213 Benign neoplasm and polyp of uterus - Secondary care - Diagnoses - ICD10 codes

Rows: 4

Code	Description	Disease	Category
D26.1	Other benign neoplasm: Corpus uteri	Benign neoplasm and polyp of uterus	Diagnosis of Benign neoplasm and polyp of uterus
D26.7	Other benign neoplasm: Other parts of uterus	Benign neoplasm and polyp of uterus	Diagnosis of Benign neoplasm and polyp of uterus
D26.9	Other benign neoplasm: Uterus, unspecified	Benign neoplasm and polyp of uterus	Diagnosis of Benign neoplasm and polyp of uterus
N84.0	Polyp of corpus uteri	Benign neoplasm and polyp of uterus	Diagnosis of Benign neoplasm and polyp of uterus

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH124/version/248/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH124/version/248/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH124', '248', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH124/version/248/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH124/version/248/export/codes/?format=json
CSV	site_root/phenotypes/PH124/version/248/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH124', '248', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
248	Benign neoplasm and polyp of uterus	ieuan.scanlon	2021-10-06	currently shown