Print

Infection of bones and joints

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH127
Version ID
254
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
ICD10 codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had Infection of bones and joints IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Secondary care

  1. ALL diagnoses of Infection of bones and joints or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 19
Code Description Disease Category
A18.0 Tuberculosis of bones and joints Infection of bones and joints Diagnosis of Infection of bones and joints
A54.4 Gonococcal infection of musculoskeletal system Infection of bones and joints Diagnosis of Infection of bones and joints
B45.3 Osseous cryptococcosis Infection of bones and joints Diagnosis of Infection of bones and joints
B67.2 Echinococcus granulosus infection of bone Infection of bones and joints Diagnosis of Infection of bones and joints
B90.2 Sequelae of tuberculosis of bones and joints Infection of bones and joints Diagnosis of Infection of bones and joints
M00 Pyogenic arthritis Infection of bones and joints Diagnosis of Infection of bones and joints
M01 Direct infections of joint in infectious and parasitic diseases classified elsewhere Infection of bones and joints Diagnosis of Infection of bones and joints
M46.2 Osteomyelitis of vertebra Infection of bones and joints Diagnosis of Infection of bones and joints
M46.3 Infection of intervertebral disc (pyogenic) Infection of bones and joints Diagnosis of Infection of bones and joints
M46.4 Discitis, unspecified Infection of bones and joints Diagnosis of Infection of bones and joints
M46.5 Other infective spondylopathies Infection of bones and joints Diagnosis of Infection of bones and joints
M49.0 Tuberculosis of spine Infection of bones and joints Diagnosis of Infection of bones and joints
M49.1 Brucella spondylitis Infection of bones and joints Diagnosis of Infection of bones and joints
M49.2 Enterobacterial spondylitis Infection of bones and joints Diagnosis of Infection of bones and joints
M49.3 Spondylopathy in other infectious and parasitic diseases classified elsewhere Infection of bones and joints Diagnosis of Infection of bones and joints
M86 Osteomyelitis Infection of bones and joints Diagnosis of Infection of bones and joints
M90.0 Tuberculosis of bone Infection of bones and joints Diagnosis of Infection of bones and joints
M90.1 Periostitis in other infectious diseases classified elsewhere Infection of bones and joints Diagnosis of Infection of bones and joints
M90.2 Osteopathy in other infectious diseases classified elsewhere Infection of bones and joints Diagnosis of Infection of bones and joints

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH127/version/254/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH127/version/254/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH127', '254', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH127/version/254/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH127/version/254/export/codes/?format=json
CSV site_root/phenotypes/PH127/version/254/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH127', '254', api_client=client)

Version History

Version
ID
Name Owner Publish date
254 Infection of bones and joints ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

Print - Print page.