Phenotype Library | phenotype: Bronchiectasis

Bronchiectasis

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH128

Version ID

256

Type

Disease or Syndrome

Data Sources

CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

♀ Female ♂ Male

Agreement Date

2019-05-20

Coding system

Read codes v2 ICD10 codes Med codes

Collections

CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Bronchiectasis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

'Bronchiectasis' diagnosis or history of diagnosis during a consultation

OR Secondary care (ICD10)

ALL diagnoses of 'Bronchiectasis' or history of diagnosis during a hospitalization

Implementation

PhenoFlow Implementation:

https://kclhi.org/phenoflow/phenotype/download/377

Publications

Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

CSV

JSON

XML

Expand All / Collapse All

C1045/3229 Bronchiectasis - Primary care - Read codes v2

Rows: 6

Code	Description	Disease	Medcode	Category
A115.00	Tuberculous bronchiectasis	Bronchiectasis	15693.0	Diagnosis of Bronchiectasis
H34..00	Bronchiectasis	Bronchiectasis	2195.0	Diagnosis of Bronchiectasis
H340.00	Recurrent bronchiectasis	Bronchiectasis	20364.0	Diagnosis of Bronchiectasis
H341.00	Post-infective bronchiectasis	Bronchiectasis	41491.0	Diagnosis of Bronchiectasis
H34z.00	Bronchiectasis NOS	Bronchiectasis	32679.0	Diagnosis of Bronchiectasis
P861.00	Congenital bronchiectasis	Bronchiectasis	56427.0	Diagnosis of Bronchiectasis

C1046/3231 Bronchiectasis - Primary care - Med codes

Rows: 6

Code	Description	Disease	ReadcodeDescr	Readcode
15693.0	Diagnosis of Bronchiectasis	Bronchiectasis	Tuberculous bronchiectasis	A115.00
20364.0	Diagnosis of Bronchiectasis	Bronchiectasis	Recurrent bronchiectasis	H340.00
2195.0	Diagnosis of Bronchiectasis	Bronchiectasis	Bronchiectasis	H34..00
32679.0	Diagnosis of Bronchiectasis	Bronchiectasis	Bronchiectasis NOS	H34z.00
41491.0	Diagnosis of Bronchiectasis	Bronchiectasis	Post-infective bronchiectasis	H341.00
56427.0	Diagnosis of Bronchiectasis	Bronchiectasis	Congenital bronchiectasis	P861.00

C1047/3233 Bronchiectasis - Secondary care - Diagnoses - ICD10 codes

Rows: 2

Code	Description	Disease	Category
J47	Bronchiectasis	Bronchiectasis	Diagnosis of Bronchiectasis
Q33.4	Congenital bronchiectasis	Bronchiectasis	Diagnosis of Bronchiectasis

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH128/version/256/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH128/version/256/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH128', '256', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH128/version/256/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH128/version/256/export/codes/?format=json
CSV	site_root/phenotypes/PH128/version/256/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH128', '256', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
256	Bronchiectasis	ieuan.scanlon	2021-10-06	currently shown