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Bronchiectasis

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH128
Version ID
256
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Bronchiectasis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. 'Bronchiectasis' diagnosis or history of diagnosis during a consultation

OR Secondary care (ICD10)

  1. ALL diagnoses of 'Bronchiectasis' or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 6
Code Description Disease Medcode Category
A115.00 Tuberculous bronchiectasis Bronchiectasis 15693.0 Diagnosis of Bronchiectasis
H34..00 Bronchiectasis Bronchiectasis 2195.0 Diagnosis of Bronchiectasis
H340.00 Recurrent bronchiectasis Bronchiectasis 20364.0 Diagnosis of Bronchiectasis
H341.00 Post-infective bronchiectasis Bronchiectasis 41491.0 Diagnosis of Bronchiectasis
H34z.00 Bronchiectasis NOS Bronchiectasis 32679.0 Diagnosis of Bronchiectasis
P861.00 Congenital bronchiectasis Bronchiectasis 56427.0 Diagnosis of Bronchiectasis
Rows: 6
Code Description Disease ReadcodeDescr Readcode
15693.0 Diagnosis of Bronchiectasis Bronchiectasis Tuberculous bronchiectasis A115.00
20364.0 Diagnosis of Bronchiectasis Bronchiectasis Recurrent bronchiectasis H340.00
2195.0 Diagnosis of Bronchiectasis Bronchiectasis Bronchiectasis H34..00
32679.0 Diagnosis of Bronchiectasis Bronchiectasis Bronchiectasis NOS H34z.00
41491.0 Diagnosis of Bronchiectasis Bronchiectasis Post-infective bronchiectasis H341.00
56427.0 Diagnosis of Bronchiectasis Bronchiectasis Congenital bronchiectasis P861.00
Rows: 2
Code Description Disease Category
J47 Bronchiectasis Bronchiectasis Diagnosis of Bronchiectasis
Q33.4 Congenital bronchiectasis Bronchiectasis Diagnosis of Bronchiectasis

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH128/version/256/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH128/version/256/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH128', '256', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH128/version/256/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH128/version/256/export/codes/?format=json
CSV site_root/phenotypes/PH128/version/256/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH128', '256', api_client=client)

Version History

Version
ID
Name Owner Publish date
256 Bronchiectasis ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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