Phenotypes > Bronchiestasis

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Bronchiestasis

Eleanor L Axson, Jennifer K Quint

ID
PH13
Version ID
26
Type
Disease or Syndrome
Data Sources
UK Biobank , CPRD Aurum , Death Registration data for CPRD Aurum , CPRD GOLD , Death Registration data for CPRD GOLD , HES Admitted Patient Care data for CPRD Aurum , HES Admitted Patient Care data for CPRD GOLD
Valid event data range
01/01/2001 - 31/12/2019
Sex
♀  Female ♂  Male
Agreement Date
2019-06-20
Coding system
Read codes v2 ICD10 codes UKBioBank codes ICD11 codes SNOMED CT codes
Collections
BREATHE Phenotype Library
Tags
No tags

Definition

Implementation


https://kclhi.org/phenoflow/phenotype/download/49

Publications

No data available

Clinical Code List

Expand All  /  Collapse All
Rows: 6
Code Description SNOMED CT Description ID SNOMED CT Concept ID Used by Quint et al. 2016
A115.00 Tuberculous bronchiectasis 38677017 23022004 Y
H34..00 Bronchiectasis 21163015 12295008 Y
H340.00 Recurrent bronchiectasis 301524014 195984007 Y
H341.00 Post-infective bronchiectasis 301525010 195985008 Y
H34z.00 Bronchiectasis NOS 21163015 12295008 Y
P861.00 Congenital bronchiectasis 128792019 77593006 Y
Rows: 5
Code Description Description Used by Quint et al. 2016 Read v2 Code
12295008 Bronchiectasis Y H34..00
195984007 Recurrent bronchiectasis Y H340.00
195985008 Post-infective bronchiectasis Y H341.00
23022004 Tuberculous bronchiectasis Y A115.00
77593006 Congenital bronchiectasis Y P861.00
Rows: 5
Code Description
131498 Date J47 first reported (bronchiectasis)
131499 Source of report of J47 (bronchiectasis)
22134 Doctor diagnosed bronchiectasis
22154 Age bronchiectasis diagnosed by doctor
22174 Recent medication for bronchiectasis
Rows: 1
Code Description
J47 Bronchiectasis
Rows: 1
Code Description
J47 Bronchiectasis
Rows: 1
Code Description
CA24 Bronchiectasis

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH13/version/26/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH13/version/26/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH13', '26', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH13/version/26/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH13/version/26/export/codes/?format=json
CSV site_root/phenotypes/PH13/version/26/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH13', '26', api_client=client)

Version History

Version
ID		 Name Owner Publish date
26 Bronchiestasis ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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