Phenotype Library | phenotype: Cholecystitis

Cholecystitis

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH134

Version ID

268

Type

Disease or Syndrome

Data Sources

CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

♀ Female ♂ Male

Agreement Date

2019-05-20

Coding system

Read codes v2 ICD10 codes Med codes

Collections

CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Cholecystitis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

'Cholecystitis' diagnosis or history of diagnosis or procedure during a consultation

OR Secondary care

ALL diagnoses of 'Cholecystitis' or history of diagnosis during a hospitalization

Implementation

PhenoFlow Implementation:

https://kclhi.org/phenoflow/phenotype/download/395

Publications

Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

CSV

JSON

XML

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C1064/3267 Cholecystitis - Primary care - Read codes v2

Rows: 22

Code	Description	Disease	Medcode	Category
J643.00	Bile duct calculus with acute cholecystitis	Cholecystitis	34683.0	Diagnosis of Cholecystitis
J643000	Bile duct calculus + acute cholecystitis and no obstruction	Cholecystitis	39025.0	Diagnosis of Cholecystitis
J643100	Bile duct calculus + acute cholecystitis and obstruction	Cholecystitis	31650.0	Diagnosis of Cholecystitis
J643z00	Bile duct calculus + acute cholecystitis - obstruct NOS	Cholecystitis	96679.0	Diagnosis of Cholecystitis
J644.00	Bile duct calculus with other cholecystitis	Cholecystitis	26889.0	Diagnosis of Cholecystitis
J644000	Bile duct calculus + other cholecystitis and no obstruction	Cholecystitis	107004.0	Diagnosis of Cholecystitis
J644100	Bile duct calculus + other cholecystitis and obstruction	Cholecystitis	44649.0	Diagnosis of Cholecystitis
J644z00	Bile duct calculus + other cholecystitis - obstruction NOS	Cholecystitis	61298.0	Diagnosis of Cholecystitis
J650.00	Acute cholecystitis	Cholecystitis	505.0	Diagnosis of Cholecystitis
J650.11	Abscess of gallbladder	Cholecystitis	44922.0	Diagnosis of Cholecystitis
J650.12	Empyema of gallbladder	Cholecystitis	932.0	Diagnosis of Cholecystitis
J650000	Acute cholecystitis unspecified	Cholecystitis	44605.0	Diagnosis of Cholecystitis
J650100	Acute angiocholecystitis	Cholecystitis	72904.0	Diagnosis of Cholecystitis
J650200	Acute emphysematous cholecystitis	Cholecystitis	46248.0	Diagnosis of Cholecystitis
J650300	Acute suppurative cholecystitis	Cholecystitis	38289.0	Diagnosis of Cholecystitis
J650400	Acute gangrenous cholecystitis	Cholecystitis	41018.0	Diagnosis of Cholecystitis
J650z00	Acute cholecystitis NOS	Cholecystitis	15735.0	Diagnosis of Cholecystitis
J651.00	Other cholecystitis	Cholecystitis	45172.0	Diagnosis of Cholecystitis
J651000	Chronic cholecystitis	Cholecystitis	7459.0	Diagnosis of Cholecystitis
J651y00	Other cholecystitis OS	Cholecystitis	63258.0	Diagnosis of Cholecystitis
J651z00	Cholecystitis NOS	Cholecystitis	1924.0	Diagnosis of Cholecystitis
Jyu8100	[X]Other cholecystitis	Cholecystitis	101538.0	Diagnosis of Cholecystitis

C1065/3269 Cholecystitis - Primary care - Med codes

Rows: 22

Code	Description	Disease	ReadcodeDescr	Readcode
101538.0	Diagnosis of Cholecystitis	Cholecystitis	[X]Other cholecystitis	Jyu8100
107004.0	Diagnosis of Cholecystitis	Cholecystitis	Bile duct calculus + other cholecystitis and no obstruction	J644000
15735.0	Diagnosis of Cholecystitis	Cholecystitis	Acute cholecystitis NOS	J650z00
1924.0	Diagnosis of Cholecystitis	Cholecystitis	Cholecystitis NOS	J651z00
26889.0	Diagnosis of Cholecystitis	Cholecystitis	Bile duct calculus with other cholecystitis	J644.00
31650.0	Diagnosis of Cholecystitis	Cholecystitis	Bile duct calculus + acute cholecystitis and obstruction	J643100
34683.0	Diagnosis of Cholecystitis	Cholecystitis	Bile duct calculus with acute cholecystitis	J643.00
38289.0	Diagnosis of Cholecystitis	Cholecystitis	Acute suppurative cholecystitis	J650300
39025.0	Diagnosis of Cholecystitis	Cholecystitis	Bile duct calculus + acute cholecystitis and no obstruction	J643000
41018.0	Diagnosis of Cholecystitis	Cholecystitis	Acute gangrenous cholecystitis	J650400
44605.0	Diagnosis of Cholecystitis	Cholecystitis	Acute cholecystitis unspecified	J650000
44649.0	Diagnosis of Cholecystitis	Cholecystitis	Bile duct calculus + other cholecystitis and obstruction	J644100
44922.0	Diagnosis of Cholecystitis	Cholecystitis	Abscess of gallbladder	J650.11
45172.0	Diagnosis of Cholecystitis	Cholecystitis	Other cholecystitis	J651.00
46248.0	Diagnosis of Cholecystitis	Cholecystitis	Acute emphysematous cholecystitis	J650200
505.0	Diagnosis of Cholecystitis	Cholecystitis	Acute cholecystitis	J650.00
61298.0	Diagnosis of Cholecystitis	Cholecystitis	Bile duct calculus + other cholecystitis - obstruction NOS	J644z00
63258.0	Diagnosis of Cholecystitis	Cholecystitis	Other cholecystitis OS	J651y00
72904.0	Diagnosis of Cholecystitis	Cholecystitis	Acute angiocholecystitis	J650100
7459.0	Diagnosis of Cholecystitis	Cholecystitis	Chronic cholecystitis	J651000
932.0	Diagnosis of Cholecystitis	Cholecystitis	Empyema of gallbladder	J650.12
96679.0	Diagnosis of Cholecystitis	Cholecystitis	Bile duct calculus + acute cholecystitis - obstruct NOS	J643z00

C1066/3271 Cholecystitis - Secondary care - Diagnoses - ICD10 codes

Rows: 4

Code	Description	Disease	Category
K80.0	Calculus of gallbladder with acute cholecystitis	Cholecystitis	Diagnosis of Cholecystitis
K80.1	Calculus of gallbladder with other cholecystitis	Cholecystitis	Diagnosis of Cholecystitis
K80.4	Calculus of bile duct with cholecystitis	Cholecystitis	Diagnosis of Cholecystitis
K81	Cholecystitis	Cholecystitis	Diagnosis of Cholecystitis

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH134/version/268/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH134/version/268/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH134', '268', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH134/version/268/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH134/version/268/export/codes/?format=json
CSV	site_root/phenotypes/PH134/version/268/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH134', '268', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
268	Cholecystitis	ieuan.scanlon	2021-10-06	currently shown