Phenotypes > Cholelithiasis

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Cholelithiasis

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

ID
PH135
Version ID
270
Type
Disease or Syndrome
Data Sources
CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD
Valid event data range
01/01/1999 - 01/07/2016
Sex
♀  Female ♂  Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Collections
CALIBER Phenotype Library
Tags
No tags

Definition

At the specified date, a patient is defined as having had 'Cholelithiasis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. 'Cholelithiasis' diagnosis or history of diagnosis or procedure during a consultation

OR Secondary care

  1. ALL diagnoses of 'Cholelithiasis' or history of diagnosis during a hospitalization

Implementation


https://kclhi.org/phenoflow/phenotype/download/397

Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Expand All  /  Collapse All
Rows: 54
Code Description Disease Medcode Category
14CE.00 H/O: gall stones Cholelithiasis 12140.0 History of Cholelithiasis
1965.00 Biliary colic Cholelithiasis 930.0 Diagnosis of Cholelithiasis
1965.11 Biliary colic symptom Cholelithiasis 7306.0 Diagnosis of Cholelithiasis
4775.00 Faeces: gall stones present Cholelithiasis 94302.0 Diagnosis of Cholelithiasis
4G2..00 O/E: gall stone Cholelithiasis 4429.0 Diagnosis of Cholelithiasis
4G21.00 O/E: cholesterol gall stone Cholelithiasis 61996.0 Diagnosis of Cholelithiasis
4G22.00 O/E: pigment gall stone Cholelithiasis 45836.0 Diagnosis of Cholelithiasis
4G2Z.00 O/E: gall stone NOS Cholelithiasis 42694.0 Diagnosis of Cholelithiasis
7648700.0 Enterotomy and removal of gallstone Cholelithiasis 17959.0 Procedure for Cholelithiasis
8CMWD00 On gallstone care pathway Cholelithiasis 109379.0 Diagnosis of Cholelithiasis
J503000 Gallstone ileus Cholelithiasis 29663.0 Diagnosis of Cholelithiasis
J64..00 Cholelithiasis Cholelithiasis 3599.0 Diagnosis of Cholelithiasis
J64..11 Bile duct calculus Cholelithiasis 29142.0 Diagnosis of Cholelithiasis
J64..12 Calculus - biliary Cholelithiasis 40075.0 Diagnosis of Cholelithiasis
J64..13 Cystic duct calculus Cholelithiasis 35469.0 Diagnosis of Cholelithiasis
J64..14 Gallbladder calculus Cholelithiasis 8620.0 Diagnosis of Cholelithiasis
J64..15 Gallstones Cholelithiasis 760.0 Diagnosis of Cholelithiasis
J64..16 Stone - biliary Cholelithiasis 17323.0 Diagnosis of Cholelithiasis
J640.00 Gallbladder calculus with acute cholecystitis Cholelithiasis 35046.0 Diagnosis of Cholelithiasis
J640000 Gallbladder calculus with acute cholecystitis +no obstruct Cholelithiasis 63208.0 Diagnosis of Cholelithiasis
J640100 Gallbladder calculus with acute cholecystitis + obstruction Cholelithiasis 48587.0 Diagnosis of Cholelithiasis
J640z00 Gallbladder calculus with acute cholecystitis - obst NOS Cholelithiasis 64132.0 Diagnosis of Cholelithiasis
J641.00 Gallbladder calculus with other cholecystitis Cholelithiasis 49106.0 Diagnosis of Cholelithiasis
J641000 Gallbladder calculus with other cholecystitis +no obstruct Cholelithiasis 49202.0 Diagnosis of Cholelithiasis
J641100 Gallbladder calculus with other cholecystitis + obstruct Cholelithiasis 47536.0 Diagnosis of Cholelithiasis
J641z00 Gallbladder calculus with other cholecystitis - obstruct NOS Cholelithiasis 71134.0 Diagnosis of Cholelithiasis
J642.00 Gallbladder calculus without mention of cholecystitis Cholelithiasis 12438.0 Diagnosis of Cholelithiasis
J642.11 Gallbladder calculus without mention of cholecystitis Cholelithiasis 4416.0 Diagnosis of Cholelithiasis
J642000 Gallbladder calculus without mention cholecystitis +no obstr Cholelithiasis 54853.0 Diagnosis of Cholelithiasis
J642100 Gallbladder calculus without mention cholecystitis + obstruc Cholelithiasis 61367.0 Diagnosis of Cholelithiasis
J642200 Biliary colic Cholelithiasis 6285.0 Diagnosis of Cholelithiasis
J642z00 Gallbladder calculus without cholecystitis and obstruct NOS Cholelithiasis 15602.0 Diagnosis of Cholelithiasis
J643.00 Bile duct calculus with acute cholecystitis Cholelithiasis 34683.0 Diagnosis of Cholelithiasis
J643000 Bile duct calculus + acute cholecystitis and no obstruction Cholelithiasis 39025.0 Diagnosis of Cholelithiasis
J643100 Bile duct calculus + acute cholecystitis and obstruction Cholelithiasis 31650.0 Diagnosis of Cholelithiasis
J643z00 Bile duct calculus + acute cholecystitis - obstruct NOS Cholelithiasis 96679.0 Diagnosis of Cholelithiasis
J644.00 Bile duct calculus with other cholecystitis Cholelithiasis 26889.0 Diagnosis of Cholelithiasis
J644000 Bile duct calculus + other cholecystitis and no obstruction Cholelithiasis 107004.0 Diagnosis of Cholelithiasis
J644100 Bile duct calculus + other cholecystitis and obstruction Cholelithiasis 44649.0 Diagnosis of Cholelithiasis
J644z00 Bile duct calculus + other cholecystitis - obstruction NOS Cholelithiasis 61298.0 Diagnosis of Cholelithiasis
J645.00 Bile duct calculus without mention of cholecystitis Cholelithiasis 22697.0 Diagnosis of Cholelithiasis
J645.11 Choledocholithiasis Cholelithiasis 15181.0 Diagnosis of Cholelithiasis
J645000 Bile duct calculus without cholecystitis, no obstruction Cholelithiasis 66713.0 Diagnosis of Cholelithiasis
J645100 Bile duct calculus without cholecystitis with obstruction Cholelithiasis 36879.0 Diagnosis of Cholelithiasis
J645200 Bile duct calculus NOS Cholelithiasis 8723.0 Diagnosis of Cholelithiasis
J645z00 Bile duct calculus without cholecystitis NOS Cholelithiasis 69721.0 Diagnosis of Cholelithiasis
J646.00 Calculus of bile duct with cholangitis Cholelithiasis 24866.0 Diagnosis of Cholelithiasis
J64z.00 Cholelithiasis NOS Cholelithiasis 27437.0 Diagnosis of Cholelithiasis
J64z000 Cholelithiasis without obstruction NOS Cholelithiasis 47888.0 Diagnosis of Cholelithiasis
J64z100 Cholelithiasis with obstruction NOS Cholelithiasis 62988.0 Diagnosis of Cholelithiasis
J64zz00 Cholelithiasis NOS Cholelithiasis 34063.0 Diagnosis of Cholelithiasis
J670500 Gallstone acute pancreatitis Cholelithiasis 12316.0 Diagnosis of Cholelithiasis
J671100 Gallstone chronic pancreatitis Cholelithiasis 42278.0 Diagnosis of Cholelithiasis
Jyu8000 [X]Other cholelithiasis Cholelithiasis 96795.0 Diagnosis of Cholelithiasis
Rows: 54
Code Description Disease ReadcodeDescr Readcode
107004.0 Diagnosis of Cholelithiasis Cholelithiasis Bile duct calculus + other cholecystitis and no obstruction J644000
109379.0 Diagnosis of Cholelithiasis Cholelithiasis On gallstone care pathway 8CMWD00
12140.0 History of Cholelithiasis Cholelithiasis H/O: gall stones 14CE.00
12316.0 Diagnosis of Cholelithiasis Cholelithiasis Gallstone acute pancreatitis J670500
12438.0 Diagnosis of Cholelithiasis Cholelithiasis Gallbladder calculus without mention of cholecystitis J642.00
15181.0 Diagnosis of Cholelithiasis Cholelithiasis Choledocholithiasis J645.11
15602.0 Diagnosis of Cholelithiasis Cholelithiasis Gallbladder calculus without cholecystitis and obstruct NOS J642z00
17323.0 Diagnosis of Cholelithiasis Cholelithiasis Stone - biliary J64..16
17959.0 Procedure for Cholelithiasis Cholelithiasis Enterotomy and removal of gallstone 7648700.0
22697.0 Diagnosis of Cholelithiasis Cholelithiasis Bile duct calculus without mention of cholecystitis J645.00
24866.0 Diagnosis of Cholelithiasis Cholelithiasis Calculus of bile duct with cholangitis J646.00
26889.0 Diagnosis of Cholelithiasis Cholelithiasis Bile duct calculus with other cholecystitis J644.00
27437.0 Diagnosis of Cholelithiasis Cholelithiasis Cholelithiasis NOS J64z.00
29142.0 Diagnosis of Cholelithiasis Cholelithiasis Bile duct calculus J64..11
29663.0 Diagnosis of Cholelithiasis Cholelithiasis Gallstone ileus J503000
31650.0 Diagnosis of Cholelithiasis Cholelithiasis Bile duct calculus + acute cholecystitis and obstruction J643100
34063.0 Diagnosis of Cholelithiasis Cholelithiasis Cholelithiasis NOS J64zz00
34683.0 Diagnosis of Cholelithiasis Cholelithiasis Bile duct calculus with acute cholecystitis J643.00
35046.0 Diagnosis of Cholelithiasis Cholelithiasis Gallbladder calculus with acute cholecystitis J640.00
35469.0 Diagnosis of Cholelithiasis Cholelithiasis Cystic duct calculus J64..13
3599.0 Diagnosis of Cholelithiasis Cholelithiasis Cholelithiasis J64..00
36879.0 Diagnosis of Cholelithiasis Cholelithiasis Bile duct calculus without cholecystitis with obstruction J645100
39025.0 Diagnosis of Cholelithiasis Cholelithiasis Bile duct calculus + acute cholecystitis and no obstruction J643000
40075.0 Diagnosis of Cholelithiasis Cholelithiasis Calculus - biliary J64..12
42278.0 Diagnosis of Cholelithiasis Cholelithiasis Gallstone chronic pancreatitis J671100
42694.0 Diagnosis of Cholelithiasis Cholelithiasis O/E: gall stone NOS 4G2Z.00
4416.0 Diagnosis of Cholelithiasis Cholelithiasis Gallbladder calculus without mention of cholecystitis J642.11
4429.0 Diagnosis of Cholelithiasis Cholelithiasis O/E: gall stone 4G2..00
44649.0 Diagnosis of Cholelithiasis Cholelithiasis Bile duct calculus + other cholecystitis and obstruction J644100
45836.0 Diagnosis of Cholelithiasis Cholelithiasis O/E: pigment gall stone 4G22.00
47536.0 Diagnosis of Cholelithiasis Cholelithiasis Gallbladder calculus with other cholecystitis + obstruct J641100
47888.0 Diagnosis of Cholelithiasis Cholelithiasis Cholelithiasis without obstruction NOS J64z000
48587.0 Diagnosis of Cholelithiasis Cholelithiasis Gallbladder calculus with acute cholecystitis + obstruction J640100
49106.0 Diagnosis of Cholelithiasis Cholelithiasis Gallbladder calculus with other cholecystitis J641.00
49202.0 Diagnosis of Cholelithiasis Cholelithiasis Gallbladder calculus with other cholecystitis +no obstruct J641000
54853.0 Diagnosis of Cholelithiasis Cholelithiasis Gallbladder calculus without mention cholecystitis +no obstr J642000
61298.0 Diagnosis of Cholelithiasis Cholelithiasis Bile duct calculus + other cholecystitis - obstruction NOS J644z00
61367.0 Diagnosis of Cholelithiasis Cholelithiasis Gallbladder calculus without mention cholecystitis + obstruc J642100
61996.0 Diagnosis of Cholelithiasis Cholelithiasis O/E: cholesterol gall stone 4G21.00
6285.0 Diagnosis of Cholelithiasis Cholelithiasis Biliary colic J642200
62988.0 Diagnosis of Cholelithiasis Cholelithiasis Cholelithiasis with obstruction NOS J64z100
63208.0 Diagnosis of Cholelithiasis Cholelithiasis Gallbladder calculus with acute cholecystitis +no obstruct J640000
64132.0 Diagnosis of Cholelithiasis Cholelithiasis Gallbladder calculus with acute cholecystitis - obst NOS J640z00
66713.0 Diagnosis of Cholelithiasis Cholelithiasis Bile duct calculus without cholecystitis, no obstruction J645000
69721.0 Diagnosis of Cholelithiasis Cholelithiasis Bile duct calculus without cholecystitis NOS J645z00
71134.0 Diagnosis of Cholelithiasis Cholelithiasis Gallbladder calculus with other cholecystitis - obstruct NOS J641z00
7306.0 Diagnosis of Cholelithiasis Cholelithiasis Biliary colic symptom 1965.11
760.0 Diagnosis of Cholelithiasis Cholelithiasis Gallstones J64..15
8620.0 Diagnosis of Cholelithiasis Cholelithiasis Gallbladder calculus J64..14
8723.0 Diagnosis of Cholelithiasis Cholelithiasis Bile duct calculus NOS J645200
930.0 Diagnosis of Cholelithiasis Cholelithiasis Biliary colic 1965.00
94302.0 Diagnosis of Cholelithiasis Cholelithiasis Faeces: gall stones present 4775.00
96679.0 Diagnosis of Cholelithiasis Cholelithiasis Bile duct calculus + acute cholecystitis - obstruct NOS J643z00
96795.0 Diagnosis of Cholelithiasis Cholelithiasis [X]Other cholelithiasis Jyu8000
Rows: 1
Code Description Disease Category
K80 Cholelithiasis Cholelithiasis Diagnosis of Cholelithiasis

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH135/version/270/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH135/version/270/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH135', '270', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH135/version/270/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH135/version/270/export/codes/?format=json
CSV site_root/phenotypes/PH135/version/270/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH135', '270', api_client=client)

Version History

Version
ID		 Name Owner Publish date
270 Cholelithiasis ieuan.scanlon 2021-10-06 currently shown

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