Phenotype Library | phenotype: Non-acute cystitis

Non-acute cystitis

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH136

Version ID

272

Type

Disease or Syndrome

Data Sources

CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

♀ Female ♂ Male

Agreement Date

2019-05-20

Coding system

Read codes v2 ICD10 codes Med codes

Collections

CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had Non-acute cystitis IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

Non-acute cystitis diagnosis or history of diagnosis during a consultation

OR Secondary care

ALL diagnoses of Non-acute cystitis or history of diagnosis during a hospitalization

Implementation

PhenoFlow Implementation:

https://kclhi.org/phenoflow/phenotype/download/402

Publications

Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

CSV

JSON

XML

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C1070/3279 Non-acute cystitis - Primary care - Read codes v2

Rows: 11

Code	Description	Disease	Medcode	Category
K151.00	Chronic interstitial cystitis	Non-acute cystitis	11585.0	Diagnosis of Non-acute cystitis
K151000	Hunner's ulcer	Non-acute cystitis	4897.0	Diagnosis of Non-acute cystitis
K151200	Submucous cystitis	Non-acute cystitis	23776.0	Diagnosis of Non-acute cystitis
K151z00	Chronic interstitial cystitis NOS	Non-acute cystitis	29460.0	Diagnosis of Non-acute cystitis
K152.00	Other chronic cystitis	Non-acute cystitis	32787.0	Diagnosis of Non-acute cystitis
K152000	Subacute cystitis	Non-acute cystitis	30068.0	Diagnosis of Non-acute cystitis
K152y00	Chronic cystitis unspecified	Non-acute cystitis	3469.0	Diagnosis of Non-acute cystitis
K152z00	Other chronic cystitis NOS	Non-acute cystitis	11315.0	Diagnosis of Non-acute cystitis
K153.11	Follicular cystitis	Non-acute cystitis	11447.0	Diagnosis of Non-acute cystitis
K15y000	Cystitis cystica	Non-acute cystitis	22682.0	Diagnosis of Non-acute cystitis
Kyu5000	[X]Other chronic cystitis	Non-acute cystitis	72686.0	Diagnosis of Non-acute cystitis

C1071/3281 Non-acute cystitis - Primary care - Med codes

Rows: 11

Code	Description	Disease	ReadcodeDescr	Readcode
11315.0	Diagnosis of Non-acute cystitis	Non-acute cystitis	Other chronic cystitis NOS	K152z00
11447.0	Diagnosis of Non-acute cystitis	Non-acute cystitis	Follicular cystitis	K153.11
11585.0	Diagnosis of Non-acute cystitis	Non-acute cystitis	Chronic interstitial cystitis	K151.00
22682.0	Diagnosis of Non-acute cystitis	Non-acute cystitis	Cystitis cystica	K15y000
23776.0	Diagnosis of Non-acute cystitis	Non-acute cystitis	Submucous cystitis	K151200
29460.0	Diagnosis of Non-acute cystitis	Non-acute cystitis	Chronic interstitial cystitis NOS	K151z00
30068.0	Diagnosis of Non-acute cystitis	Non-acute cystitis	Subacute cystitis	K152000
32787.0	Diagnosis of Non-acute cystitis	Non-acute cystitis	Other chronic cystitis	K152.00
3469.0	Diagnosis of Non-acute cystitis	Non-acute cystitis	Chronic cystitis unspecified	K152y00
4897.0	Diagnosis of Non-acute cystitis	Non-acute cystitis	Hunner's ulcer	K151000
72686.0	Diagnosis of Non-acute cystitis	Non-acute cystitis	[X]Other chronic cystitis	Kyu5000

C1072/3283 Non-acute cystitis - Secondary care - Diagnoses - ICD10 codes

Rows: 2

Code	Description	Disease	Category
N30.1	Interstitial cystitis (chronic)	Non-acute cystitis	Diagnosis of Non-acute cystitis
N30.2	Other chronic cystitis	Non-acute cystitis	Diagnosis of Non-acute cystitis

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH136/version/272/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH136/version/272/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH136', '272', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH136/version/272/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH136/version/272/export/codes/?format=json
CSV	site_root/phenotypes/PH136/version/272/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH136', '272', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
272	Non-acute cystitis	ieuan.scanlon	2021-10-06	currently shown