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Carcinoma in situ_cervical

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH139
Version ID
278
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had Carcinoma in situ_cervical IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. Carcinoma in situ_cervical diagnosis or history of diagnosis during a consultation

OR Secondary care

  1. ALL diagnoses of Carcinoma in situ_cervical or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 30
Code Description Disease Medcode Category
4K2..11 Dyskaryosis on cervical smear Carcinoma in situ_cervical 7610.0 Diagnosis of Carcinoma in situ_cervical
4K2J.00 Cervical smear - low grade dyskaryosis Carcinoma in situ_cervical 107295.0 Diagnosis of Carcinoma in situ_cervical
4K2K.00 Cervical smear - high grade dyskaryosis (moderate) Carcinoma in situ_cervical 107363.0 Diagnosis of Carcinoma in situ_cervical
4K2L.00 Cervical smear - high grade dyskaryosis (severe) Carcinoma in situ_cervical 107264.0 Diagnosis of Carcinoma in situ_cervical
4K2N.00 Cervical smear - ?endocervical type glandular neoplasia Carcinoma in situ_cervical 107497.0 Diagnosis of Carcinoma in situ_cervical
4K2P.00 Cervical smear - ?non-cervical type glandular neoplasia Carcinoma in situ_cervical 107348.0 Diagnosis of Carcinoma in situ_cervical
B831.00 Carcinoma in situ of cervix uteri Carcinoma in situ_cervical 3279.0 Diagnosis of Carcinoma in situ_cervical
B831.11 CIN III - carcinoma in situ of cervix Carcinoma in situ_cervical 4087.0 Diagnosis of Carcinoma in situ_cervical
B831.12 Cervical intraepithelial neoplasia Carcinoma in situ_cervical 5295.0 Diagnosis of Carcinoma in situ_cervical
B831.13 Cervical intraepithelial neoplasia grade III Carcinoma in situ_cervical 21886.0 Diagnosis of Carcinoma in situ_cervical
B831000 Carcinoma in situ of endocervix Carcinoma in situ_cervical 24228.0 Diagnosis of Carcinoma in situ_cervical
B831100 Carcinoma in situ of exocervix Carcinoma in situ_cervical 50126.0 Diagnosis of Carcinoma in situ_cervical
ByuFA00 [X]Carcinoma in situ of other parts of cervix Carcinoma in situ_cervical 72695.0 Diagnosis of Carcinoma in situ_cervical
K551.00 Dysplasia of cervix uteri Carcinoma in situ_cervical 1910.0 Diagnosis of Carcinoma in situ_cervical
K551.12 CIN I - II, cervical dysplasia Carcinoma in situ_cervical 16859.0 Diagnosis of Carcinoma in situ_cervical
K551000 Anaplasia of cervix Carcinoma in situ_cervical 63477.0 Diagnosis of Carcinoma in situ_cervical
K551100 Epidermidization of cervix Carcinoma in situ_cervical 107831.0 Diagnosis of Carcinoma in situ_cervical
K551300 Mild cervical dysplasia Carcinoma in situ_cervical 9184.0 Diagnosis of Carcinoma in situ_cervical
K551311 Cervical intraepithelial neoplasia grade I Carcinoma in situ_cervical 8226.0 Diagnosis of Carcinoma in situ_cervical
K551400 Moderate cervical dysplasia Carcinoma in situ_cervical 22037.0 Diagnosis of Carcinoma in situ_cervical
K551411 Cervical intraepithelial neoplasia grade II Carcinoma in situ_cervical 22493.0 Diagnosis of Carcinoma in situ_cervical
K551X00 Severe cervical dysplasia, not elsewhere classified Carcinoma in situ_cervical 20602.0 Diagnosis of Carcinoma in situ_cervical
K551z00 Dysplasia of cervix NOS Carcinoma in situ_cervical 12913.0 Diagnosis of Carcinoma in situ_cervical
R150000 [D]Dyskaryotic cervical smear Carcinoma in situ_cervical 5446.0 Diagnosis of Carcinoma in situ_cervical
ZV13B00 [V]Personal history of mild cervical dysplasia Carcinoma in situ_cervical 64005.0 History of Carcinoma in situ_cervical
ZV13B11 [V]PH of cervical intraepithelial neoplasia, grade I Carcinoma in situ_cervical 61148.0 History of Carcinoma in situ_cervical
ZV13C00 [V]Personal history of moderate cervical dysplasia Carcinoma in situ_cervical 32449.0 History of Carcinoma in situ_cervical
ZV13C11 [V]PH of cervical intraepithelial neoplasia grade II Carcinoma in situ_cervical 30366.0 History of Carcinoma in situ_cervical
ZV13D00 [V]Personal history of severe cervical dysplasia Carcinoma in situ_cervical 42853.0 History of Carcinoma in situ_cervical
ZV13E00 [V]PH of cervical intraepithelial neoplasia, grade III Carcinoma in situ_cervical 28613.0 History of Carcinoma in situ_cervical
Rows: 30
Code Description Disease ReadcodeDescr Readcode
107264.0 Diagnosis of Carcinoma in situ_cervical Carcinoma in situ_cervical Cervical smear - high grade dyskaryosis (severe) 4K2L.00
107295.0 Diagnosis of Carcinoma in situ_cervical Carcinoma in situ_cervical Cervical smear - low grade dyskaryosis 4K2J.00
107348.0 Diagnosis of Carcinoma in situ_cervical Carcinoma in situ_cervical Cervical smear - ?non-cervical type glandular neoplasia 4K2P.00
107363.0 Diagnosis of Carcinoma in situ_cervical Carcinoma in situ_cervical Cervical smear - high grade dyskaryosis (moderate) 4K2K.00
107497.0 Diagnosis of Carcinoma in situ_cervical Carcinoma in situ_cervical Cervical smear - ?endocervical type glandular neoplasia 4K2N.00
107831.0 Diagnosis of Carcinoma in situ_cervical Carcinoma in situ_cervical Epidermidization of cervix K551100
12913.0 Diagnosis of Carcinoma in situ_cervical Carcinoma in situ_cervical Dysplasia of cervix NOS K551z00
16859.0 Diagnosis of Carcinoma in situ_cervical Carcinoma in situ_cervical CIN I - II, cervical dysplasia K551.12
1910.0 Diagnosis of Carcinoma in situ_cervical Carcinoma in situ_cervical Dysplasia of cervix uteri K551.00
20602.0 Diagnosis of Carcinoma in situ_cervical Carcinoma in situ_cervical Severe cervical dysplasia, not elsewhere classified K551X00
21886.0 Diagnosis of Carcinoma in situ_cervical Carcinoma in situ_cervical Cervical intraepithelial neoplasia grade III B831.13
22037.0 Diagnosis of Carcinoma in situ_cervical Carcinoma in situ_cervical Moderate cervical dysplasia K551400
22493.0 Diagnosis of Carcinoma in situ_cervical Carcinoma in situ_cervical Cervical intraepithelial neoplasia grade II K551411
24228.0 Diagnosis of Carcinoma in situ_cervical Carcinoma in situ_cervical Carcinoma in situ of endocervix B831000
28613.0 History of Carcinoma in situ_cervical Carcinoma in situ_cervical [V]PH of cervical intraepithelial neoplasia, grade III ZV13E00
30366.0 History of Carcinoma in situ_cervical Carcinoma in situ_cervical [V]PH of cervical intraepithelial neoplasia grade II ZV13C11
32449.0 History of Carcinoma in situ_cervical Carcinoma in situ_cervical [V]Personal history of moderate cervical dysplasia ZV13C00
3279.0 Diagnosis of Carcinoma in situ_cervical Carcinoma in situ_cervical Carcinoma in situ of cervix uteri B831.00
4087.0 Diagnosis of Carcinoma in situ_cervical Carcinoma in situ_cervical CIN III - carcinoma in situ of cervix B831.11
42853.0 History of Carcinoma in situ_cervical Carcinoma in situ_cervical [V]Personal history of severe cervical dysplasia ZV13D00
50126.0 Diagnosis of Carcinoma in situ_cervical Carcinoma in situ_cervical Carcinoma in situ of exocervix B831100
5295.0 Diagnosis of Carcinoma in situ_cervical Carcinoma in situ_cervical Cervical intraepithelial neoplasia B831.12
5446.0 Diagnosis of Carcinoma in situ_cervical Carcinoma in situ_cervical [D]Dyskaryotic cervical smear R150000
61148.0 History of Carcinoma in situ_cervical Carcinoma in situ_cervical [V]PH of cervical intraepithelial neoplasia, grade I ZV13B11
63477.0 Diagnosis of Carcinoma in situ_cervical Carcinoma in situ_cervical Anaplasia of cervix K551000
64005.0 History of Carcinoma in situ_cervical Carcinoma in situ_cervical [V]Personal history of mild cervical dysplasia ZV13B00
72695.0 Diagnosis of Carcinoma in situ_cervical Carcinoma in situ_cervical [X]Carcinoma in situ of other parts of cervix ByuFA00
7610.0 Diagnosis of Carcinoma in situ_cervical Carcinoma in situ_cervical Dyskaryosis on cervical smear 4K2..11
8226.0 Diagnosis of Carcinoma in situ_cervical Carcinoma in situ_cervical Cervical intraepithelial neoplasia grade I K551311
9184.0 Diagnosis of Carcinoma in situ_cervical Carcinoma in situ_cervical Mild cervical dysplasia K551300
Rows: 2
Code Description Disease Category
D06 Carcinoma in situ of cervix uteri Carcinoma in situ_cervical Diagnosis of Carcinoma in situ_cervical
N87 Dysplasia of cervix uteri Carcinoma in situ_cervical Diagnosis of Carcinoma in situ_cervical

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH139/version/278/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH139/version/278/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH139', '278', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH139/version/278/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH139/version/278/export/codes/?format=json
CSV site_root/phenotypes/PH139/version/278/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH139', '278', api_client=client)

Version History

Version
ID
Name Owner Publish date
278 Carcinoma in situ_cervical ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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