Cystic Fibrosis

PH14 / 28

Eleanor L Axson, Jennifer K Quint

Oct 6, 2021

Clinical-Coded Phenotype

  1. Overview

    Phenotype Type
    Disease or syndrome
    Sex
    Both
    Valid Event Date Range
    01/01/2001 - 31/12/2019
    Coding System
    ICD10 codesRead codes v2SNOMED CT codesUKBioBank codesICD11 codes
    Data Sources
    CPRD GOLD
    CPRD Aurum
    HES Admitted Patient Care data for CPRD GOLD
    HES Admitted Patient Care data for CPRD Aurum
    Death Registration data for CPRD GOLD
    Death Registration data for CPRD Aurum
    UK Biobank
    Collections
    BREATHEPhenotype Library
    Tags
    No data
    Ontology
    No data

  2. Definition

  3. Implementation

    Phenoflow ID

    Please see the PhenoFLOW website here for more information on workflow-based Phenotypes.

    PhenoFLOW Reference: https://kclhi.org/phenoflow/workflows/github.com/phenoflow/Cystic-Fibrosis---a879d510-16f5-11ef-9de4-4d4ea830ad16/blob/read-potential-cases-fhir/Cystic-Fibrosis.cwl

    Implementation

    No data

  4. Clinical Codelist

  5. Publication

    Related publications

    No known publications

    Citation Example

    Eleanor L Axson, Jennifer K Quint. PH14 / 28 - Cystic Fibrosis. Phenotype Library [Online]. 06 October 2021. Available from: http://phenotypes.healthdatagateway.org/phenotypes/PH14/version/28/detail/. [Accessed 27 January 2026]

  6. API

    To Export Phenotype Details:

    FormatAPI
    JSON site_root/api/v1/phenotypes/PH14/version/28/detail/?format=json
    R Package

    # Download here

    library(ConceptLibraryClient)


    # Connect to API

    client = ConceptLibraryClient::Connection$new(public=TRUE)


    # Get details of Phenotype

    phenotype_details = client$phenotypes$get_detail(
     'PH14',
     version_id=28
    )

    Py Package

    # Download here

    from pyconceptlibraryclient import Client


    # Connect to API

    client = Client(public=True)


    # Get details of Phenotype

    phenotype_detail = client.phenotypes.get_detail(
     'PH14',
     version_id=28
    )

    To Export Phenotype Code List:

    FormatAPI
    JSON site_root/api/v1/phenotypes/PH14/version/28/export/codes/?format=json
    R Package

    # Download here

    library(ConceptLibraryClient)


    # Connect to API

    client = ConceptLibraryClient::Connection$new(public=TRUE)


    # Get codelist of Phenotype

    phenotype_codelist = client$phenotypes$get_codelist(
     'PH14',
     version_id=28
    )

    Py Package

    # Download here

    from pyconceptlibraryclient import Client


    # Connect to API

    client = Client(public=True)


    # Get codelist of Phenotype

    phenotype_codelist = client.phenotypes.get_codelist(
     'PH14',
     version_id=28
    )

  7. Version History

    Version IDNameOwnerPublish date
    Cystic Fibrosis ieuan.scanlon2021-10-06 15:59