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Coeliac disease

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH141
Version ID
282
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Coeliac disease' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. 'Coeliac disease' diagnosis or history of diagnosis or procedure during a consultation

OR Secondary care

  1. ALL diagnoses of 'Coeliac disease' or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 15
Code Description Disease Medcode Category
6648.00 Coeliac disease monitoring Coeliac disease 102315.0 History of Coeliac disease
6648000.0 Coeliac disease annual review Coeliac disease 102617.0 History of Coeliac disease
8IAp.00 Coeliac disease annual review declined Coeliac disease 103379.0 History of Coeliac disease
9mB..00 Coeliac disease monitoring invitation Coeliac disease 106282.0 History of Coeliac disease
9mB1.00 Coeliac disease monitoring invitation first letter Coeliac disease 106326.0 History of Coeliac disease
J690.00 Coeliac disease Coeliac disease 1515.0 Diagnosis of Coeliac disease
J690.11 Coeliac rickets Coeliac disease 68680.0 Diagnosis of Coeliac disease
J690.12 Gee - Herter disease Coeliac disease 57966.0 Diagnosis of Coeliac disease
J690.13 Gluten enteropathy Coeliac disease 3509.0 Diagnosis of Coeliac disease
J690.14 Sprue - nontropical Coeliac disease 16365.0 Diagnosis of Coeliac disease
J690.15 Steatorrhea - idiopathic Coeliac disease 4787.0 Diagnosis of Coeliac disease
J690000 Congenital coeliac disease Coeliac disease 62397.0 Diagnosis of Coeliac disease
J690100 Acquired coeliac disease Coeliac disease 63195.0 Diagnosis of Coeliac disease
J690z00 Coeliac disease NOS Coeliac disease 44310.0 Diagnosis of Coeliac disease
ZC2C200 Dietary advice for coeliac disease Coeliac disease 45925.0 Diagnosis of Coeliac disease
Rows: 15
Code Description Disease ReadcodeDescr Readcode
102315.0 History of Coeliac disease Coeliac disease Coeliac disease monitoring 6648.00
102617.0 History of Coeliac disease Coeliac disease Coeliac disease annual review 6648000.0
103379.0 History of Coeliac disease Coeliac disease Coeliac disease annual review declined 8IAp.00
106282.0 History of Coeliac disease Coeliac disease Coeliac disease monitoring invitation 9mB..00
106326.0 History of Coeliac disease Coeliac disease Coeliac disease monitoring invitation first letter 9mB1.00
1515.0 Diagnosis of Coeliac disease Coeliac disease Coeliac disease J690.00
16365.0 Diagnosis of Coeliac disease Coeliac disease Sprue - nontropical J690.14
3509.0 Diagnosis of Coeliac disease Coeliac disease Gluten enteropathy J690.13
44310.0 Diagnosis of Coeliac disease Coeliac disease Coeliac disease NOS J690z00
45925.0 Diagnosis of Coeliac disease Coeliac disease Dietary advice for coeliac disease ZC2C200
4787.0 Diagnosis of Coeliac disease Coeliac disease Steatorrhea - idiopathic J690.15
57966.0 Diagnosis of Coeliac disease Coeliac disease Gee - Herter disease J690.12
62397.0 Diagnosis of Coeliac disease Coeliac disease Congenital coeliac disease J690000
63195.0 Diagnosis of Coeliac disease Coeliac disease Acquired coeliac disease J690100
68680.0 Diagnosis of Coeliac disease Coeliac disease Coeliac rickets J690.11
Rows: 1
Code Description Disease Category
K90.0 Coeliac disease Coeliac disease Diagnosis of Coeliac disease

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH141/version/282/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH141/version/282/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH141', '282', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH141/version/282/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH141/version/282/export/codes/?format=json
CSV site_root/phenotypes/PH141/version/282/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH141', '282', api_client=client)

Version History

Version
ID
Name Owner Publish date
282 Coeliac disease ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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