Phenotype Library | phenotype: Coeliac disease

Coeliac disease

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH141

Version ID

282

Type

Disease or Syndrome

Data Sources

CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

♀ Female ♂ Male

Agreement Date

2019-05-20

Coding system

Read codes v2 ICD10 codes Med codes

Collections

CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Coeliac disease' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

'Coeliac disease' diagnosis or history of diagnosis or procedure during a consultation

OR Secondary care

ALL diagnoses of 'Coeliac disease' or history of diagnosis during a hospitalization

Implementation

PhenoFlow Implementation:

https://kclhi.org/phenoflow/phenotype/download/416

Publications

Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

CSV

JSON

XML

Expand All / Collapse All

C1085/3309 Coeliac disease - Primary care - Read codes v2

Rows: 15

Code	Description	Disease	Medcode	Category
6648.00	Coeliac disease monitoring	Coeliac disease	102315.0	History of Coeliac disease
6648000.0	Coeliac disease annual review	Coeliac disease	102617.0	History of Coeliac disease
8IAp.00	Coeliac disease annual review declined	Coeliac disease	103379.0	History of Coeliac disease
9mB..00	Coeliac disease monitoring invitation	Coeliac disease	106282.0	History of Coeliac disease
9mB1.00	Coeliac disease monitoring invitation first letter	Coeliac disease	106326.0	History of Coeliac disease
J690.00	Coeliac disease	Coeliac disease	1515.0	Diagnosis of Coeliac disease
J690.11	Coeliac rickets	Coeliac disease	68680.0	Diagnosis of Coeliac disease
J690.12	Gee - Herter disease	Coeliac disease	57966.0	Diagnosis of Coeliac disease
J690.13	Gluten enteropathy	Coeliac disease	3509.0	Diagnosis of Coeliac disease
J690.14	Sprue - nontropical	Coeliac disease	16365.0	Diagnosis of Coeliac disease
J690.15	Steatorrhea - idiopathic	Coeliac disease	4787.0	Diagnosis of Coeliac disease
J690000	Congenital coeliac disease	Coeliac disease	62397.0	Diagnosis of Coeliac disease
J690100	Acquired coeliac disease	Coeliac disease	63195.0	Diagnosis of Coeliac disease
J690z00	Coeliac disease NOS	Coeliac disease	44310.0	Diagnosis of Coeliac disease
ZC2C200	Dietary advice for coeliac disease	Coeliac disease	45925.0	Diagnosis of Coeliac disease

C1086/3311 Coeliac disease - Primary care - Med codes

Rows: 15

Code	Description	Disease	ReadcodeDescr	Readcode
102315.0	History of Coeliac disease	Coeliac disease	Coeliac disease monitoring	6648.00
102617.0	History of Coeliac disease	Coeliac disease	Coeliac disease annual review	6648000.0
103379.0	History of Coeliac disease	Coeliac disease	Coeliac disease annual review declined	8IAp.00
106282.0	History of Coeliac disease	Coeliac disease	Coeliac disease monitoring invitation	9mB..00
106326.0	History of Coeliac disease	Coeliac disease	Coeliac disease monitoring invitation first letter	9mB1.00
1515.0	Diagnosis of Coeliac disease	Coeliac disease	Coeliac disease	J690.00
16365.0	Diagnosis of Coeliac disease	Coeliac disease	Sprue - nontropical	J690.14
3509.0	Diagnosis of Coeliac disease	Coeliac disease	Gluten enteropathy	J690.13
44310.0	Diagnosis of Coeliac disease	Coeliac disease	Coeliac disease NOS	J690z00
45925.0	Diagnosis of Coeliac disease	Coeliac disease	Dietary advice for coeliac disease	ZC2C200
4787.0	Diagnosis of Coeliac disease	Coeliac disease	Steatorrhea - idiopathic	J690.15
57966.0	Diagnosis of Coeliac disease	Coeliac disease	Gee - Herter disease	J690.12
62397.0	Diagnosis of Coeliac disease	Coeliac disease	Congenital coeliac disease	J690000
63195.0	Diagnosis of Coeliac disease	Coeliac disease	Acquired coeliac disease	J690100
68680.0	Diagnosis of Coeliac disease	Coeliac disease	Coeliac rickets	J690.11

C1087/3313 Coeliac disease - Secondary care - Diagnoses - ICD10 codes

Rows: 1

Code	Description	Disease	Category
K90.0	Coeliac disease	Coeliac disease	Diagnosis of Coeliac disease

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH141/version/282/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH141/version/282/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH141', '282', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH141/version/282/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH141/version/282/export/codes/?format=json
CSV	site_root/phenotypes/PH141/version/282/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH141', '282', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
282	Coeliac disease	ieuan.scanlon	2021-10-06	currently shown