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Crohn's disease

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH144
Version ID
288
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Crohn's disease' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. 'Crohn's disease' diagnosis or history of diagnosis or procedure during a consultation

OR Secondary care

  1. ALL diagnoses of 'Crohn's disease' or history of diagnosis during a hospitalization

Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 26
Code Description Disease Medcode Category
J08z900 Orofacial Crohn's disease Crohn's disease 29616.0 Diagnosis of Crohn's disease
J40..00 Regional enteritis - Crohn's disease Crohn's disease 11286.0 Diagnosis of Crohn's disease
J40..11 Crohn's disease Crohn's disease 593.0 Diagnosis of Crohn's disease
J40..12 Granulomatous enteritis Crohn's disease 51578.0 Diagnosis of Crohn's disease
J400.00 Regional enteritis of the small bowel Crohn's disease 51576.0 Diagnosis of Crohn's disease
J400000 Regional enteritis of the duodenum Crohn's disease 71945.0 Diagnosis of Crohn's disease
J400100 Regional enteritis of the jejunum Crohn's disease 63036.0 Diagnosis of Crohn's disease
J400200 Crohn's disease of the terminal ileum Crohn's disease 28476.0 Diagnosis of Crohn's disease
J400300 Crohn's disease of the ileum unspecified Crohn's disease 66238.0 Diagnosis of Crohn's disease
J400400 Crohn's disease of the ileum NOS Crohn's disease 39278.0 Diagnosis of Crohn's disease
J400500 Exacerbation of Crohn's disease of small intestine Crohn's disease 36913.0 Diagnosis of Crohn's disease
J400z00 Crohn's disease of the small bowel NOS Crohn's disease 9359.0 Diagnosis of Crohn's disease
J401.00 Regional enteritis of the large bowel Crohn's disease 44426.0 Diagnosis of Crohn's disease
J401000 Regional enteritis of the colon Crohn's disease 62628.0 Diagnosis of Crohn's disease
J401100 Regional enteritis of the rectum Crohn's disease 64773.0 Diagnosis of Crohn's disease
J401200 Exacerbation of Crohn's disease of large intestine Crohn's disease 39037.0 Diagnosis of Crohn's disease
J401z00 Crohn's disease of the large bowel NOS Crohn's disease 20688.0 Diagnosis of Crohn's disease
J401z11 Crohn's colitis Crohn's disease 6538.0 Diagnosis of Crohn's disease
J402.00 Regional ileocolitis Crohn's disease 15773.0 Diagnosis of Crohn's disease
J40z.00 Regional enteritis NOS Crohn's disease 52449.0 Diagnosis of Crohn's disease
J40z.11 Crohn's disease NOS Crohn's disease 59994.0 Diagnosis of Crohn's disease
Jyu4000 [X]Other Crohn's disease Crohn's disease 69959.0 Diagnosis of Crohn's disease
N031100 Arthropathy in Crohn's disease Crohn's disease 20480.0 Diagnosis of Crohn's disease
N045300 Juvenile arthritis in Crohn's disease Crohn's disease 12575.0 History of Crohn's disease
ZR3S.00 Crohn's disease activity index Crohn's disease 11337.0 Diagnosis of Crohn's disease
ZR3S.11 CDAI - Crohn's disease activity index Crohn's disease 11119.0 Diagnosis of Crohn's disease
Rows: 26
Code Description Disease ReadcodeDescr Readcode
11119.0 Diagnosis of Crohn's disease Crohn's disease CDAI - Crohn's disease activity index ZR3S.11
11286.0 Diagnosis of Crohn's disease Crohn's disease Regional enteritis - Crohn's disease J40..00
11337.0 Diagnosis of Crohn's disease Crohn's disease Crohn's disease activity index ZR3S.00
12575.0 History of Crohn's disease Crohn's disease Juvenile arthritis in Crohn's disease N045300
15773.0 Diagnosis of Crohn's disease Crohn's disease Regional ileocolitis J402.00
20480.0 Diagnosis of Crohn's disease Crohn's disease Arthropathy in Crohn's disease N031100
20688.0 Diagnosis of Crohn's disease Crohn's disease Crohn's disease of the large bowel NOS J401z00
28476.0 Diagnosis of Crohn's disease Crohn's disease Crohn's disease of the terminal ileum J400200
29616.0 Diagnosis of Crohn's disease Crohn's disease Orofacial Crohn's disease J08z900
36913.0 Diagnosis of Crohn's disease Crohn's disease Exacerbation of Crohn's disease of small intestine J400500
39037.0 Diagnosis of Crohn's disease Crohn's disease Exacerbation of Crohn's disease of large intestine J401200
39278.0 Diagnosis of Crohn's disease Crohn's disease Crohn's disease of the ileum NOS J400400
44426.0 Diagnosis of Crohn's disease Crohn's disease Regional enteritis of the large bowel J401.00
51576.0 Diagnosis of Crohn's disease Crohn's disease Regional enteritis of the small bowel J400.00
51578.0 Diagnosis of Crohn's disease Crohn's disease Granulomatous enteritis J40..12
52449.0 Diagnosis of Crohn's disease Crohn's disease Regional enteritis NOS J40z.00
593.0 Diagnosis of Crohn's disease Crohn's disease Crohn's disease J40..11
59994.0 Diagnosis of Crohn's disease Crohn's disease Crohn's disease NOS J40z.11
62628.0 Diagnosis of Crohn's disease Crohn's disease Regional enteritis of the colon J401000
63036.0 Diagnosis of Crohn's disease Crohn's disease Regional enteritis of the jejunum J400100
64773.0 Diagnosis of Crohn's disease Crohn's disease Regional enteritis of the rectum J401100
6538.0 Diagnosis of Crohn's disease Crohn's disease Crohn's colitis J401z11
66238.0 Diagnosis of Crohn's disease Crohn's disease Crohn's disease of the ileum unspecified J400300
69959.0 Diagnosis of Crohn's disease Crohn's disease [X]Other Crohn's disease Jyu4000
71945.0 Diagnosis of Crohn's disease Crohn's disease Regional enteritis of the duodenum J400000
9359.0 Diagnosis of Crohn's disease Crohn's disease Crohn's disease of the small bowel NOS J400z00
Rows: 1
Code Description Disease Category
K50 Crohn's disease [regional enteritis] Crohn's disease Diagnosis of Crohn's disease

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH144/version/288/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH144/version/288/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH144', '288', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH144/version/288/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH144/version/288/export/codes/?format=json
CSV site_root/phenotypes/PH144/version/288/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH144', '288', api_client=client)

Version History

Version
ID
Name Owner Publish date
288 Crohn's disease ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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