Phenotype Library | phenotype: Crohn's disease

Crohn's disease

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH144

Version ID

288

Type

Disease or Syndrome

Data Sources

CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

♀ Female ♂ Male

Agreement Date

2019-05-20

Coding system

Read codes v2 ICD10 codes Med codes

Collections

CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Crohn's disease' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

'Crohn's disease' diagnosis or history of diagnosis or procedure during a consultation

OR Secondary care

ALL diagnoses of 'Crohn's disease' or history of diagnosis during a hospitalization

Publications

Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

CSV

JSON

XML

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C1096/3331 Crohn's disease - Primary care - Read codes v2

Rows: 26

Code	Description	Disease	Medcode	Category
J08z900	Orofacial Crohn's disease	Crohn's disease	29616.0	Diagnosis of Crohn's disease
J40..00	Regional enteritis - Crohn's disease	Crohn's disease	11286.0	Diagnosis of Crohn's disease
J40..11	Crohn's disease	Crohn's disease	593.0	Diagnosis of Crohn's disease
J40..12	Granulomatous enteritis	Crohn's disease	51578.0	Diagnosis of Crohn's disease
J400.00	Regional enteritis of the small bowel	Crohn's disease	51576.0	Diagnosis of Crohn's disease
J400000	Regional enteritis of the duodenum	Crohn's disease	71945.0	Diagnosis of Crohn's disease
J400100	Regional enteritis of the jejunum	Crohn's disease	63036.0	Diagnosis of Crohn's disease
J400200	Crohn's disease of the terminal ileum	Crohn's disease	28476.0	Diagnosis of Crohn's disease
J400300	Crohn's disease of the ileum unspecified	Crohn's disease	66238.0	Diagnosis of Crohn's disease
J400400	Crohn's disease of the ileum NOS	Crohn's disease	39278.0	Diagnosis of Crohn's disease
J400500	Exacerbation of Crohn's disease of small intestine	Crohn's disease	36913.0	Diagnosis of Crohn's disease
J400z00	Crohn's disease of the small bowel NOS	Crohn's disease	9359.0	Diagnosis of Crohn's disease
J401.00	Regional enteritis of the large bowel	Crohn's disease	44426.0	Diagnosis of Crohn's disease
J401000	Regional enteritis of the colon	Crohn's disease	62628.0	Diagnosis of Crohn's disease
J401100	Regional enteritis of the rectum	Crohn's disease	64773.0	Diagnosis of Crohn's disease
J401200	Exacerbation of Crohn's disease of large intestine	Crohn's disease	39037.0	Diagnosis of Crohn's disease
J401z00	Crohn's disease of the large bowel NOS	Crohn's disease	20688.0	Diagnosis of Crohn's disease
J401z11	Crohn's colitis	Crohn's disease	6538.0	Diagnosis of Crohn's disease
J402.00	Regional ileocolitis	Crohn's disease	15773.0	Diagnosis of Crohn's disease
J40z.00	Regional enteritis NOS	Crohn's disease	52449.0	Diagnosis of Crohn's disease
J40z.11	Crohn's disease NOS	Crohn's disease	59994.0	Diagnosis of Crohn's disease
Jyu4000	[X]Other Crohn's disease	Crohn's disease	69959.0	Diagnosis of Crohn's disease
N031100	Arthropathy in Crohn's disease	Crohn's disease	20480.0	Diagnosis of Crohn's disease
N045300	Juvenile arthritis in Crohn's disease	Crohn's disease	12575.0	History of Crohn's disease
ZR3S.00	Crohn's disease activity index	Crohn's disease	11337.0	Diagnosis of Crohn's disease
ZR3S.11	CDAI - Crohn's disease activity index	Crohn's disease	11119.0	Diagnosis of Crohn's disease

C1097/3333 Crohn's disease - Primary care - Med codes

Rows: 26

Code	Description	Disease	ReadcodeDescr	Readcode
11119.0	Diagnosis of Crohn's disease	Crohn's disease	CDAI - Crohn's disease activity index	ZR3S.11
11286.0	Diagnosis of Crohn's disease	Crohn's disease	Regional enteritis - Crohn's disease	J40..00
11337.0	Diagnosis of Crohn's disease	Crohn's disease	Crohn's disease activity index	ZR3S.00
12575.0	History of Crohn's disease	Crohn's disease	Juvenile arthritis in Crohn's disease	N045300
15773.0	Diagnosis of Crohn's disease	Crohn's disease	Regional ileocolitis	J402.00
20480.0	Diagnosis of Crohn's disease	Crohn's disease	Arthropathy in Crohn's disease	N031100
20688.0	Diagnosis of Crohn's disease	Crohn's disease	Crohn's disease of the large bowel NOS	J401z00
28476.0	Diagnosis of Crohn's disease	Crohn's disease	Crohn's disease of the terminal ileum	J400200
29616.0	Diagnosis of Crohn's disease	Crohn's disease	Orofacial Crohn's disease	J08z900
36913.0	Diagnosis of Crohn's disease	Crohn's disease	Exacerbation of Crohn's disease of small intestine	J400500
39037.0	Diagnosis of Crohn's disease	Crohn's disease	Exacerbation of Crohn's disease of large intestine	J401200
39278.0	Diagnosis of Crohn's disease	Crohn's disease	Crohn's disease of the ileum NOS	J400400
44426.0	Diagnosis of Crohn's disease	Crohn's disease	Regional enteritis of the large bowel	J401.00
51576.0	Diagnosis of Crohn's disease	Crohn's disease	Regional enteritis of the small bowel	J400.00
51578.0	Diagnosis of Crohn's disease	Crohn's disease	Granulomatous enteritis	J40..12
52449.0	Diagnosis of Crohn's disease	Crohn's disease	Regional enteritis NOS	J40z.00
593.0	Diagnosis of Crohn's disease	Crohn's disease	Crohn's disease	J40..11
59994.0	Diagnosis of Crohn's disease	Crohn's disease	Crohn's disease NOS	J40z.11
62628.0	Diagnosis of Crohn's disease	Crohn's disease	Regional enteritis of the colon	J401000
63036.0	Diagnosis of Crohn's disease	Crohn's disease	Regional enteritis of the jejunum	J400100
64773.0	Diagnosis of Crohn's disease	Crohn's disease	Regional enteritis of the rectum	J401100
6538.0	Diagnosis of Crohn's disease	Crohn's disease	Crohn's colitis	J401z11
66238.0	Diagnosis of Crohn's disease	Crohn's disease	Crohn's disease of the ileum unspecified	J400300
69959.0	Diagnosis of Crohn's disease	Crohn's disease	[X]Other Crohn's disease	Jyu4000
71945.0	Diagnosis of Crohn's disease	Crohn's disease	Regional enteritis of the duodenum	J400000
9359.0	Diagnosis of Crohn's disease	Crohn's disease	Crohn's disease of the small bowel NOS	J400z00

C1098/3335 Crohn's disease - Secondary care - Diagnoses - ICD10 codes

Rows: 1

Code	Description	Disease	Category
K50	Crohn's disease [regional enteritis]	Crohn's disease	Diagnosis of Crohn's disease

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH144/version/288/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH144/version/288/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH144', '288', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH144/version/288/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH144/version/288/export/codes/?format=json
CSV	site_root/phenotypes/PH144/version/288/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH144', '288', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
288	Crohn's disease	ieuan.scanlon	2021-10-06	currently shown