Death by complications of medical and surgical care (unnatural cause)
John, A, McGregor, J., Jones, I., Lee, S. C., Walters, J. T. R., Owen, M. J., O'Donovan, M., DelPozo-Banos, M., Berridge, D., & Lloyd, K.
PH1492 / 2967 Clinical-Coded Phenotype
Overview
Phenotype TypeDisease or syndromeSexBothValid Event Date RangeNo dataCoding SystemICD10 codesData SourcesNo dataCollectionsAdolescent Data Platform (ADP)DATAMINDPhenotype LibraryTagsNo dataDefinition
Causes of deaths are ICD-10 codes associated with the “underlying cause of death” from the Office for National Statistics death registry. Based on a previous study (John et al., 2018), causes of deaths are first grouped into natural and unnatural main categories and then further grouped in accordance with the respective chapters of ICD-10: #### Natural cause * Deaths by certain infectious and parasitic diseases (natural cause) [ICD10] ICD-10 codes: A00-B99 * Deaths by neoplasms (natural cause) [ICD10] ICD-10 codes: C00-D48 * Deaths by diseases of the blood and blood-forming organs and certain disorders involving the immune mechanism (natural cause) [ICD10] ICD-10 codes: D50-D89 * Deaths by endocrine, nutritional and metabolic diseases (natural cause) [ICD10] ICD-10 codes: E00-E88 * Deaths by mental and behavioural disorders (natural cause) [ICD10] ICD-10 codes: F01-F99 * Deaths by diseases of the nervous system (natural cause) [ICD10] ICD-10 codes: G00-G99 * Deaths by diseases of the eye and adnexa (natural cause) [ICD10] ICD-10 codes: H00-H57 * Deaths by diseases of the ear and mastoid process (natural cause) [ICD10] ICD-10 codes: H60-H93 * Deaths by diseases of the circulatory system (natural cause) [ICD10] ICD-10 codes: I00-I99 * Deaths by diseases of the respiratory system (natural cause) [ICD10] ICD-10 codes: J00-J99 * Deaths by diseases of the digestive system (natural cause) [ICD10] ICD-10 codes: K00-K92 * Deaths by diseases of the skin and subcutaneous tissue (natural cause) [ICD10] ICD-10 codes: L00-L98 * Deaths by diseases of the musculoskeletal system and connective tissue (natural cause) [ICD10] ICD-10 codes: M00-M99 * Deaths by diseases of the genitourinary system (natural cause) [ICD10] ICD-10 codes: N00-N99 * Deaths by pregnancy, childbirth and the puerperium (natural cause) [ICD10] ICD-10 codes: O00-O99 * Deaths by certain conditions originating in the perinatal period (natural cause) [ICD10] ICD-10 codes: P00-P96 * Deaths by congenital malformations, deformations and chromosomal abnormalities (natural cause) [ICD10] ICD-10 codes: Q00-Q99 * Deaths by symptoms, signs and abnormal clinical and laboratory findings, not elsewhere classified (natural cause) [ICD10] ICD-10 codes: R00-R99 #### Unnatural cause * Deaths by accidents (unnatural cause) [ICD10] ICD-10 codes: V01-X59, Y85-Y86 * Deaths by assaults (unnatural cause) [ICD10] ICD-10 codes: X85-Y09 * Deaths by complications of medical and surgical care (unnatural cause) [ICD10] [Current concept] ICD-10 codes: Y40-Y88 * Deaths by suicide Please refer to relevant concept(s) for death by suicide: #### Deaths by suicide - Intentional self-harm [ICD10] #### Deaths by suicide - Undetermined intent * Deaths by suicide - Undetermined intent (pre-2007) [ICD10] * Deaths by suicide - Undetermined intent (2007-onward) [ICD10] #### Deaths by suicide - Accidental verdicts [ICD10] As discussed with a clinician in the study team (Prof Ann John), all codes related to deaths by suicide but with age of death not complying with the corresponding age criteria should be regarded as deaths by unknown causes. #### References John, A., McGregor, J., Jones, I., Lee, S.C., Walters, J.T., Owen, M.J., O'Donovan, M., DelPozo-Banos, M., Berridge, D. & Lloyd, K. (2018). Premature mortality among people with severe mental illness — New evidence from linked primary care data. Schizophrenia Research, 199, 154-162.
Implementation
No dataImplementation
Clinical Code List
PUBLISHED - 358 Codes
Publication
https://www.sciencedirect.com/science/article/pii/S0920996418301981
(DOI:https://doi.org/10.1016/j.schres.2018.04.009)
Citation Requirements
John A, McGregor J, Jones I, Lee SC, Walters JTR, Owen MJ, O'Donovan M, DelPozo-Banos M, Berridge D, Lloyd K. Premature mortality among people with severe mental illness - New evidence from linked primary care data. Schizophr Res. 2018 Sep;199:154-162. doi: 10.1016/j.schres.2018.04.009.
Citation Example
John, A, McGregor, J., Jones, I., Lee, S. C., Walters, J. T. R., Owen, M. J., O'Donovan, M., DelPozo-Banos, M., Berridge, D., & Lloyd, K.. PH1492 / 2967 - Death by complications of medical and surgical care (unnatural cause). Phenotype Library [Online]. 13 November 2023. Available from: http://phenotypes.healthdatagateway.org/phenotypes/PH1492/version/2967/detail/. [Accessed 23 October 2024]
API
To Export Phenotype Details:
Format API JSON site_root/api/v1/phenotypes/PH1492/version/2967/detail/?format=json R Package library(ConceptLibraryClient)
# Connect to API
client = ConceptLibraryClient::Connection$new(public=TRUE)
# Get details of phenotype
phenotype_details = client$phenotypes$get_detail(
'PH1492',
version_id=2967
)Py Package from pyconceptlibraryclient import Client
# Connect to API
client = Client(public=True)
# Get codelist of phenotype
phenotype_codelist = client.phenotypes.get_detail(
'PH1492',
version_id=2967
)To Export Phenotype Code List:
Format API JSON site_root/api/v1/phenotypes/PH1492/version/2967/export/codes/?format=json CSV site_root/phenotypes/PH1492/version/2967/export/codes/ R Package library(ConceptLibraryClient)
# Connect to API
client = ConceptLibraryClient::Connection$new(public=TRUE)
# Get codelist of phenotype
phenotype_codelist = client$phenotypes$get_codelist(
'PH1492',
version_id=2967
)Py Package from pyconceptlibraryclient import Client
# Connect to API
client = Client(public=True)
# Get codelist of phenotype
phenotype_codelist = client.phenotypes.get_codelist(
'PH1492',
version_id=2967
)Version History