Phenotype Library | phenotype: Dysmenorrhoea

Dysmenorrhoea

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH157

Version ID

314

Type

Disease or Syndrome

Data Sources

CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

♀ Female ♂ Male

Agreement Date

2019-05-20

Coding system

Read codes v2 ICD10 codes Med codes

Collections

CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Dysmenorrhoea' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

'Dysmenorrhoea' diagnosis or history of diagnosis during a consultation

OR Secondary care

ALL diagnoses of 'Dysmenorrhoea' or history of diagnosis during a hospitalization

Implementation

PhenoFlow Implementation:

https://kclhi.org/phenoflow/phenotype/download/455

Publications

Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

CSV

JSON

XML

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C1134/3407 Dysmenorrhoea - Primary care - Read codes v2

Rows: 10

Code	Description	Disease	Medcode	Category
1574.00	H/O: dysmenorrhoea	Dysmenorrhoea	6383.0	History of Dysmenorrhoea
1574.11	H/O: painful periods	Dysmenorrhoea	7759.0	History of Dysmenorrhoea
Eu45y11	[X]Psychogenic dysmenorrhoea	Dysmenorrhoea	46925.0	Diagnosis of Dysmenorrhoea
K583.00	Dysmenorrhoea	Dysmenorrhoea	693.0	Diagnosis of Dysmenorrhoea
K583.11	Painful menorrhoea	Dysmenorrhoea	3266.0	Diagnosis of Dysmenorrhoea
K583.12	Painful menstruation	Dysmenorrhoea	7938.0	Diagnosis of Dysmenorrhoea
K583.13	Period pains	Dysmenorrhoea	1666.0	Diagnosis of Dysmenorrhoea
K583.14	Spasmodic dysmenorrhoea	Dysmenorrhoea	24183.0	Diagnosis of Dysmenorrhoea
K583000	Primary dysmenorrhoea	Dysmenorrhoea	9869.0	Diagnosis of Dysmenorrhoea
K583100	Secondary dysmenorrhoea	Dysmenorrhoea	11467.0	Diagnosis of Dysmenorrhoea

C1135/3409 Dysmenorrhoea - Primary care - Med codes

Rows: 10

Code	Description	Disease	ReadcodeDescr	Readcode
11467.0	Diagnosis of Dysmenorrhoea	Dysmenorrhoea	Secondary dysmenorrhoea	K583100
1666.0	Diagnosis of Dysmenorrhoea	Dysmenorrhoea	Period pains	K583.13
24183.0	Diagnosis of Dysmenorrhoea	Dysmenorrhoea	Spasmodic dysmenorrhoea	K583.14
3266.0	Diagnosis of Dysmenorrhoea	Dysmenorrhoea	Painful menorrhoea	K583.11
46925.0	Diagnosis of Dysmenorrhoea	Dysmenorrhoea	[X]Psychogenic dysmenorrhoea	Eu45y11
6383.0	History of Dysmenorrhoea	Dysmenorrhoea	H/O: dysmenorrhoea	1574.00
693.0	Diagnosis of Dysmenorrhoea	Dysmenorrhoea	Dysmenorrhoea	K583.00
7759.0	History of Dysmenorrhoea	Dysmenorrhoea	H/O: painful periods	1574.11
7938.0	Diagnosis of Dysmenorrhoea	Dysmenorrhoea	Painful menstruation	K583.12
9869.0	Diagnosis of Dysmenorrhoea	Dysmenorrhoea	Primary dysmenorrhoea	K583000

C1136/3411 Dysmenorrhoea - Secondary care - Diagnoses - ICD10 codes

Rows: 3

Code	Description	Disease	Category
N94.4	Primary dysmenorrhoea	Dysmenorrhoea	Diagnosis of Dysmenorrhoea
N94.5	Secondary dysmenorrhoea	Dysmenorrhoea	Diagnosis of Dysmenorrhoea
N94.6	Dysmenorrhoea, unspecified	Dysmenorrhoea	Diagnosis of Dysmenorrhoea

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH157/version/314/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH157/version/314/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH157', '314', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH157/version/314/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH157/version/314/export/codes/?format=json
CSV	site_root/phenotypes/PH157/version/314/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH157', '314', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
314	Dysmenorrhoea	ieuan.scanlon	2021-10-06	currently shown