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Ear and Upper Respiratory Tract Infections

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH158
Version ID
316
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
ICD10 codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had Ear and Upper Respiratory Tract Infections IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Secondary care

  1. ALL diagnoses of Ear and Upper Respiratory Tract Infections or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 36
Code Description Disease Category
A18.6 Tuberculosis of ear Ear and Upper Respiratory Tract Infections Diagnosis of Ear and Upper Respiratory Tract Infections
A36.0 Pharyngeal diphtheria Ear and Upper Respiratory Tract Infections Diagnosis of Ear and Upper Respiratory Tract Infections
A36.1 Nasopharyngeal diphtheria Ear and Upper Respiratory Tract Infections Diagnosis of Ear and Upper Respiratory Tract Infections
A36.2 Laryngeal diphtheria Ear and Upper Respiratory Tract Infections Diagnosis of Ear and Upper Respiratory Tract Infections
A54.5 Gonococcal pharyngitis Ear and Upper Respiratory Tract Infections Diagnosis of Ear and Upper Respiratory Tract Infections
A56.4 Chlamydial infection of pharynx Ear and Upper Respiratory Tract Infections Diagnosis of Ear and Upper Respiratory Tract Infections
B05.3 Measles complicated by otitis media Ear and Upper Respiratory Tract Infections Diagnosis of Ear and Upper Respiratory Tract Infections
B27 Infectious mononucleosis Ear and Upper Respiratory Tract Infections Diagnosis of Ear and Upper Respiratory Tract Infections
B44.2 Tonsillar aspergillosis Ear and Upper Respiratory Tract Infections Diagnosis of Ear and Upper Respiratory Tract Infections
B87.3 Nasopharyngeal myiasis Ear and Upper Respiratory Tract Infections Diagnosis of Ear and Upper Respiratory Tract Infections
B87.4 Aural myiasis Ear and Upper Respiratory Tract Infections Diagnosis of Ear and Upper Respiratory Tract Infections
H60 Otitis externa Ear and Upper Respiratory Tract Infections Diagnosis of Ear and Upper Respiratory Tract Infections
H62.0 Otitis externa in bacterial diseases classified elsewhere Ear and Upper Respiratory Tract Infections Diagnosis of Ear and Upper Respiratory Tract Infections
H62.1 Otitis externa in viral diseases classified elsewhere Ear and Upper Respiratory Tract Infections Diagnosis of Ear and Upper Respiratory Tract Infections
H62.2 Otitis externa in mycoses Ear and Upper Respiratory Tract Infections Diagnosis of Ear and Upper Respiratory Tract Infections
H62.3 Otitis externa in other infectious and parasitic diseases classified elsewhere Ear and Upper Respiratory Tract Infections Diagnosis of Ear and Upper Respiratory Tract Infections
H62.4 Otitis externa in other diseases classified elsewhere Ear and Upper Respiratory Tract Infections Diagnosis of Ear and Upper Respiratory Tract Infections
H65 Nonsuppurative otitis media Ear and Upper Respiratory Tract Infections Diagnosis of Ear and Upper Respiratory Tract Infections
H66 Suppurative and unspecified otitis media Ear and Upper Respiratory Tract Infections Diagnosis of Ear and Upper Respiratory Tract Infections
H67 Otitis media in diseases classified elsewhere Ear and Upper Respiratory Tract Infections Diagnosis of Ear and Upper Respiratory Tract Infections
H70 Mastoiditis and related conditions Ear and Upper Respiratory Tract Infections Diagnosis of Ear and Upper Respiratory Tract Infections
H73.0 Acute myringitis Ear and Upper Respiratory Tract Infections Diagnosis of Ear and Upper Respiratory Tract Infections
H73.1 Chronic myringitis Ear and Upper Respiratory Tract Infections Diagnosis of Ear and Upper Respiratory Tract Infections
H75.0 Mastoiditis in infectious and parasitic diseases classified elsewhere Ear and Upper Respiratory Tract Infections Diagnosis of Ear and Upper Respiratory Tract Infections
J00 Acute nasopharyngitis [common cold] Ear and Upper Respiratory Tract Infections Diagnosis of Ear and Upper Respiratory Tract Infections
J01 Acute sinusitis Ear and Upper Respiratory Tract Infections Diagnosis of Ear and Upper Respiratory Tract Infections
J02 Acute pharyngitis Ear and Upper Respiratory Tract Infections Diagnosis of Ear and Upper Respiratory Tract Infections
J03 Acute tonsillitis Ear and Upper Respiratory Tract Infections Diagnosis of Ear and Upper Respiratory Tract Infections
J04 Acute laryngitis and tracheitis Ear and Upper Respiratory Tract Infections Diagnosis of Ear and Upper Respiratory Tract Infections
J05 Acute obstructive laryngitis [croup] and epiglottitis Ear and Upper Respiratory Tract Infections Diagnosis of Ear and Upper Respiratory Tract Infections
J06 Acute upper respiratory infections of multiple and unspecified sites Ear and Upper Respiratory Tract Infections Diagnosis of Ear and Upper Respiratory Tract Infections
J34.0 Abscess, furuncle and carbuncle of nose Ear and Upper Respiratory Tract Infections Diagnosis of Ear and Upper Respiratory Tract Infections
J36 Peritonsillar abscess Ear and Upper Respiratory Tract Infections Diagnosis of Ear and Upper Respiratory Tract Infections
J37 Chronic laryngitis and laryngotracheitis Ear and Upper Respiratory Tract Infections Diagnosis of Ear and Upper Respiratory Tract Infections
J39.0 Retropharyngeal and parapharyngeal abscess Ear and Upper Respiratory Tract Infections Diagnosis of Ear and Upper Respiratory Tract Infections
J39.1 Other abscess of pharynx Ear and Upper Respiratory Tract Infections Diagnosis of Ear and Upper Respiratory Tract Infections

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH158/version/316/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH158/version/316/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH158', '316', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH158/version/316/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH158/version/316/export/codes/?format=json
CSV site_root/phenotypes/PH158/version/316/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH158', '316', api_client=client)

Version History

Version
ID
Name Owner Publish date
316 Ear and Upper Respiratory Tract Infections ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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