Phenotype Library | phenotype: Encephalitis

Encephalitis

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH160

Version ID

320

Type

Disease or Syndrome

Data Sources

HES Admitted Patient Care data for CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

♀ Female ♂ Male

Agreement Date

2019-05-20

Coding system

ICD10 codes

Collections

CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Encephalitis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Secondary care

ALL diagnoses of 'Encephalitis' or history of diagnosis during a hospitalization

Implementation

PhenoFlow Implementation:

https://kclhi.org/phenoflow/phenotype/download/464

Publications

Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

CSV

JSON

XML

Expand All / Collapse All

C1141/3421 Encephalitis - Secondary care - Diagnoses - ICD10 codes

Rows: 10

Code	Description	Disease	Category
A83	Mosquito-borne viral encephalitis	Encephalitis	Diagnosis of Encephalitis
A84	Tick-borne viral encephalitis	Encephalitis	Diagnosis of Encephalitis
A85	Other viral encephalitis, not elsewhere classified	Encephalitis	Diagnosis of Encephalitis
A86	Unspecified viral encephalitis	Encephalitis	Diagnosis of Encephalitis
B00.4	Herpesviral encephalitis	Encephalitis	Diagnosis of Encephalitis
B01.1	Varicella encephalitis	Encephalitis	Diagnosis of Encephalitis
B02.0	Zoster encephalitis	Encephalitis	Diagnosis of Encephalitis
B05.0	Measles complicated by encephalitis	Encephalitis	Diagnosis of Encephalitis
B26.2	Mumps encephalitis	Encephalitis	Diagnosis of Encephalitis
B94.1	Sequelae of viral encephalitis	Encephalitis	Diagnosis of Encephalitis

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH160/version/320/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH160/version/320/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH160', '320', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH160/version/320/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH160/version/320/export/codes/?format=json
CSV	site_root/phenotypes/PH160/version/320/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH160', '320', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
320	Encephalitis	ieuan.scanlon	2021-10-06	currently shown