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Endometriosis

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH162
Version ID
324
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Endometriosis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. 'Endometriosis' diagnosis or history of diagnosis or procedure during a consultation

OR Secondary care

  1. ALL diagnoses of 'Endometriosis' or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 37
Code Description Disease Medcode Category
7E0D800 Laparoscopic laser destruction of endometriosis Endometriosis 12175.0 Procedure for Endometriosis
BBL1.11 [M]Stromal endometriosis Endometriosis 56751.0 Diagnosis of Endometriosis
K50..00 Endometriosis Endometriosis 499.0 Diagnosis of Endometriosis
K50..11 Adenomyosis Endometriosis 3432.0 Diagnosis of Endometriosis
K500.00 Endometriosis of uterus Endometriosis 41735.0 Diagnosis of Endometriosis
K500000 Internal endometriosis Endometriosis 19266.0 Diagnosis of Endometriosis
K500100 Endometriosis of myometrium Endometriosis 61192.0 Diagnosis of Endometriosis
K500111 Adenomyosis of endometrium Endometriosis 22007.0 Diagnosis of Endometriosis
K500200 Endometriosis of cervix Endometriosis 36805.0 Diagnosis of Endometriosis
K500z00 Endometriosis of uterus NOS Endometriosis 42092.0 Diagnosis of Endometriosis
K501.00 Endometriosis of ovary Endometriosis 19682.0 Diagnosis of Endometriosis
K501.11 Chocolate cyst of ovary Endometriosis 16143.0 Diagnosis of Endometriosis
K502.00 Endometriosis of the fallopian tube Endometriosis 30091.0 Diagnosis of Endometriosis
K503.00 Endometriosis of the pelvic peritoneum Endometriosis 22662.0 Diagnosis of Endometriosis
K503000 Endometriosis of the broad ligament Endometriosis 67137.0 Diagnosis of Endometriosis
K503100 Endometriosis of the pouch of Douglas Endometriosis 50464.0 Diagnosis of Endometriosis
K503200 Endometriosis of the parametrium Endometriosis 63232.0 Diagnosis of Endometriosis
K503300 Endometriosis of the round ligament Endometriosis 50544.0 Diagnosis of Endometriosis
K503z00 Endometriosis of the pelvic peritoneum NOS Endometriosis 42424.0 Diagnosis of Endometriosis
K504.00 Endometriosis of the rectovaginal septum and vagina Endometriosis 70854.0 Diagnosis of Endometriosis
K504000 Endometriosis of the rectovaginal septum Endometriosis 50518.0 Diagnosis of Endometriosis
K504100 Endometriosis of the vagina Endometriosis 37392.0 Diagnosis of Endometriosis
K504z00 Endometriosis of the rectovaginal septum and vagina NOS Endometriosis 94268.0 Diagnosis of Endometriosis
K505.00 Endometriosis of the intestine Endometriosis 20194.0 Diagnosis of Endometriosis
K505000 Endometriosis of the appendix Endometriosis 71993.0 Diagnosis of Endometriosis
K505100 Endometriosis of the colon Endometriosis 62982.0 Diagnosis of Endometriosis
K505200 Endometriosis of the rectum Endometriosis 60784.0 Diagnosis of Endometriosis
K505z00 Endometriosis of the intestine NOS Endometriosis 97045.0 Diagnosis of Endometriosis
K506.00 Endometriosis in scar of skin Endometriosis 60097.0 Diagnosis of Endometriosis
K50y.00 Other endometriosis Endometriosis 49603.0 Diagnosis of Endometriosis
K50y000 Endometriosis of the bladder Endometriosis 36930.0 Diagnosis of Endometriosis
K50y100 Endometriosis of the lung Endometriosis 69931.0 Diagnosis of Endometriosis
K50y200 Endometriosis of the umbilicus Endometriosis 48222.0 Diagnosis of Endometriosis
K50y300 Endometriosis of the vulva Endometriosis 68037.0 Diagnosis of Endometriosis
K50yz00 Other endometriosis NOS Endometriosis 66361.0 Diagnosis of Endometriosis
K50z.00 Endometriosis NOS Endometriosis 9492.0 Diagnosis of Endometriosis
Kyu9000 [X]Other endometriosis Endometriosis 63749.0 Diagnosis of Endometriosis
Rows: 37
Code Description Disease ReadcodeDescr Readcode
12175.0 Procedure for Endometriosis Endometriosis Laparoscopic laser destruction of endometriosis 7E0D800
16143.0 Diagnosis of Endometriosis Endometriosis Chocolate cyst of ovary K501.11
19266.0 Diagnosis of Endometriosis Endometriosis Internal endometriosis K500000
19682.0 Diagnosis of Endometriosis Endometriosis Endometriosis of ovary K501.00
20194.0 Diagnosis of Endometriosis Endometriosis Endometriosis of the intestine K505.00
22007.0 Diagnosis of Endometriosis Endometriosis Adenomyosis of endometrium K500111
22662.0 Diagnosis of Endometriosis Endometriosis Endometriosis of the pelvic peritoneum K503.00
30091.0 Diagnosis of Endometriosis Endometriosis Endometriosis of the fallopian tube K502.00
3432.0 Diagnosis of Endometriosis Endometriosis Adenomyosis K50..11
36805.0 Diagnosis of Endometriosis Endometriosis Endometriosis of cervix K500200
36930.0 Diagnosis of Endometriosis Endometriosis Endometriosis of the bladder K50y000
37392.0 Diagnosis of Endometriosis Endometriosis Endometriosis of the vagina K504100
41735.0 Diagnosis of Endometriosis Endometriosis Endometriosis of uterus K500.00
42092.0 Diagnosis of Endometriosis Endometriosis Endometriosis of uterus NOS K500z00
42424.0 Diagnosis of Endometriosis Endometriosis Endometriosis of the pelvic peritoneum NOS K503z00
48222.0 Diagnosis of Endometriosis Endometriosis Endometriosis of the umbilicus K50y200
49603.0 Diagnosis of Endometriosis Endometriosis Other endometriosis K50y.00
499.0 Diagnosis of Endometriosis Endometriosis Endometriosis K50..00
50464.0 Diagnosis of Endometriosis Endometriosis Endometriosis of the pouch of Douglas K503100
50518.0 Diagnosis of Endometriosis Endometriosis Endometriosis of the rectovaginal septum K504000
50544.0 Diagnosis of Endometriosis Endometriosis Endometriosis of the round ligament K503300
56751.0 Diagnosis of Endometriosis Endometriosis [M]Stromal endometriosis BBL1.11
60097.0 Diagnosis of Endometriosis Endometriosis Endometriosis in scar of skin K506.00
60784.0 Diagnosis of Endometriosis Endometriosis Endometriosis of the rectum K505200
61192.0 Diagnosis of Endometriosis Endometriosis Endometriosis of myometrium K500100
62982.0 Diagnosis of Endometriosis Endometriosis Endometriosis of the colon K505100
63232.0 Diagnosis of Endometriosis Endometriosis Endometriosis of the parametrium K503200
63749.0 Diagnosis of Endometriosis Endometriosis [X]Other endometriosis Kyu9000
66361.0 Diagnosis of Endometriosis Endometriosis Other endometriosis NOS K50yz00
67137.0 Diagnosis of Endometriosis Endometriosis Endometriosis of the broad ligament K503000
68037.0 Diagnosis of Endometriosis Endometriosis Endometriosis of the vulva K50y300
69931.0 Diagnosis of Endometriosis Endometriosis Endometriosis of the lung K50y100
70854.0 Diagnosis of Endometriosis Endometriosis Endometriosis of the rectovaginal septum and vagina K504.00
71993.0 Diagnosis of Endometriosis Endometriosis Endometriosis of the appendix K505000
94268.0 Diagnosis of Endometriosis Endometriosis Endometriosis of the rectovaginal septum and vagina NOS K504z00
9492.0 Diagnosis of Endometriosis Endometriosis Endometriosis NOS K50z.00
97045.0 Diagnosis of Endometriosis Endometriosis Endometriosis of the intestine NOS K505z00
Rows: 1
Code Description Disease Category
N80 Endometriosis Endometriosis Diagnosis of Endometriosis

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH162/version/324/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH162/version/324/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH162', '324', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH162/version/324/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH162/version/324/export/codes/?format=json
CSV site_root/phenotypes/PH162/version/324/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH162', '324', api_client=client)

Version History

Version
ID
Name Owner Publish date
324 Endometriosis ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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