Smoking

PH1621 / 3229

Samantha Ip, Teri-Louise North, Fatemeh Torabi, Yangfan Li, Hoda Abbasizanjani, Ashley Akbari, Elsie Horne, Rachel Denholm, Spencer Keene, Spiros Denaxas, Kamlesh Khunti, Cathie Sudlow, William N Whiteley, Jonathan A C Sterne, Angela M Wood, Venexia Walker

Feb 12, 2024

BHF Data Science Centre Phenotype

  1. Overview

    Project Name
    CCU002_06
    Phenotype Type
    Lifestyle risk factor
    Sex
    Both
    Valid Event Date Range
    No data
    Coding System
    SNOMED CT codes
    Data Sources
    GPES Data for Pandemic Planning and Research (COVID-19)
    Hospital Episode Statistics Admitted Patient Care
    Civil Registration - Deaths
    Covid-19 Second Generation Surveillance System
    Trusted Research Environments for CVD-COVID-UK / COVID-IMPACT
    Secondary Uses Services Payment By Results
    Ontology
    No data
    Collections
    BHF Data Science CentrePhenotype Library
    Tags
    No data

  2. Definition

    Definition

    No data

    Clinical Trials

    No Trials

    Endorsements

    No endorsement

  3. Implementation

    Implementation

    No data

  4. Clinical Codelist

  5. Publication

    Related publications

    No known publications

    Citation Example

    Samantha Ip, Teri-Louise North, Fatemeh Torabi, Yangfan Li, Hoda Abbasizanjani, Ashley Akbari, Elsie Horne, Rachel Denholm, Spencer Keene, Spiros Denaxas, Kamlesh Khunti, Cathie Sudlow, William N Whiteley, Jonathan A C Sterne, Angela M Wood, Venexia Walker. PH1621 / 3229 - Smoking. Phenotype Library [Online]. 12 February 2024. Available from: http://phenotypes.healthdatagateway.org/phenotypes/PH1621/version/3229/detail/. [Accessed 21 February 2026]

  6. API

    To Export Phenotype Details:

    FormatAPI
    JSON site_root/api/v1/phenotypes/PH1621/version/3229/detail/?format=json
    R Package

    # Download here

    library(ConceptLibraryClient)


    # Connect to API

    client = ConceptLibraryClient::Connection$new(public=TRUE)


    # Get details of Phenotype

    phenotype_details = client$phenotypes$get_detail(
     'PH1621',
     version_id=3229
    )

    Py Package

    # Download here

    from pyconceptlibraryclient import Client


    # Connect to API

    client = Client(public=True)


    # Get details of Phenotype

    phenotype_detail = client.phenotypes.get_detail(
     'PH1621',
     version_id=3229
    )

    To Export Phenotype Code List:

    FormatAPI
    JSON site_root/api/v1/phenotypes/PH1621/version/3229/export/codes/?format=json
    R Package

    # Download here

    library(ConceptLibraryClient)


    # Connect to API

    client = ConceptLibraryClient::Connection$new(public=TRUE)


    # Get codelist of Phenotype

    phenotype_codelist = client$phenotypes$get_codelist(
     'PH1621',
     version_id=3229
    )

    Py Package

    # Download here

    from pyconceptlibraryclient import Client


    # Connect to API

    client = Client(public=True)


    # Get codelist of Phenotype

    phenotype_codelist = client.phenotypes.get_codelist(
     'PH1621',
     version_id=3229
    )

  7. Version History

    Version IDNameOwnerPublish date
    Smoking yangfanli2025-04-15 16:36