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Enteropathic arthropathy

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH163
Version ID
326
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Enteropathic arthropathy' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. 'Enteropathic arthropathy' diagnosis or history of diagnosis during a consultation

OR Secondary care (ICD10)

  1. ALL diagnoses of 'Enteropathic arthropathy' or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 3
Code Description Disease Medcode Category
N031000 Arthropathy in ulcerative colitis Enteropathic arthropathy 17641.0 Diagnosis of Enteropathic arthropathy
N031100 Arthropathy in Crohn's disease Enteropathic arthropathy 20480.0 Diagnosis of Enteropathic arthropathy
Nyu1400 [X]Other enteropathic arthropathies Enteropathic arthropathy 97917.0 Diagnosis of Enteropathic arthropathy
Rows: 3
Code Description Disease ReadcodeDescr Readcode
17641.0 Diagnosis of Enteropathic arthropathy Enteropathic arthropathy Arthropathy in ulcerative colitis N031000
20480.0 Diagnosis of Enteropathic arthropathy Enteropathic arthropathy Arthropathy in Crohn's disease N031100
97917.0 Diagnosis of Enteropathic arthropathy Enteropathic arthropathy [X]Other enteropathic arthropathies Nyu1400
Rows: 3
Code Description Disease Category
M07.4 Arthropathy in Crohn's disease [regional enteritis] Enteropathic arthropathy Diagnosis of Enteropathic arthropathy
M07.5 Arthropathy in ulcerative colitis Enteropathic arthropathy Diagnosis of Enteropathic arthropathy
M07.6 Other enteropathic arthropathies Enteropathic arthropathy Diagnosis of Enteropathic arthropathy

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH163/version/326/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH163/version/326/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH163', '326', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH163/version/326/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH163/version/326/export/codes/?format=json
CSV site_root/phenotypes/PH163/version/326/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH163', '326', api_client=client)

Version History

Version
ID
Name Owner Publish date
326 Enteropathic arthropathy ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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