Phenotype Library | phenotype: Eye infections

Eye infections

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH167

Version ID

334

Type

Disease or Syndrome

Data Sources

HES Admitted Patient Care data for CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

♀ Female ♂ Male

Agreement Date

2019-05-20

Coding system

ICD10 codes

Collections

CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had Eye infections IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Secondary care

ALL diagnoses of Eye infections or history of diagnosis during a hospitalization

Implementation

PhenoFlow Implementation:

https://kclhi.org/phenoflow/phenotype/download/484

Publications

Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

CSV

JSON

XML

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C1160/3459 Eye infections - Secondary care - Diagnoses - ICD10 codes

Rows: 18

Code	Description	Disease	Category
A18.5	Tuberculosis of eye	Eye infections	Diagnosis of Eye infections
A21.1	Oculoglandular tularaemia	Eye infections	Diagnosis of Eye infections
A54.3	Gonococcal infection of eye	Eye infections	Diagnosis of Eye infections
A71	Trachoma	Eye infections	Diagnosis of Eye infections
A74.0	Chlamydial conjunctivitis	Eye infections	Diagnosis of Eye infections
B00.5	Herpesviral ocular disease	Eye infections	Diagnosis of Eye infections
B02.3	Zoster ocular disease	Eye infections	Diagnosis of Eye infections
B30	Viral conjunctivitis	Eye infections	Diagnosis of Eye infections
B58.0	Toxoplasma oculopathy	Eye infections	Diagnosis of Eye infections
B69.1	Cysticercosis of eye	Eye infections	Diagnosis of Eye infections
B87.2	Ocular myiasis	Eye infections	Diagnosis of Eye infections
B94.0	Sequelae of trachoma	Eye infections	Diagnosis of Eye infections
H00.0	Hordeolum and other deep inflammation of eyelid	Eye infections	Diagnosis of Eye infections
H10	Conjunctivitis	Eye infections	Diagnosis of Eye infections
H13.1	Conjunctivitis in infectious and parasitic diseases classified elsewhere	Eye infections	Diagnosis of Eye infections
H19.1	Herpesviral keratitis and keratoconjunctivitis	Eye infections	Diagnosis of Eye infections
H19.2	Keratitis and keratoconjunctivitis in other infectious and parasitic diseases classified elsewhere	Eye infections	Diagnosis of Eye infections
P39.1	Neonatal conjunctivitis and dacryocystitis	Eye infections	Diagnosis of Eye infections

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH167/version/334/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH167/version/334/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH167', '334', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH167/version/334/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH167/version/334/export/codes/?format=json
CSV	site_root/phenotypes/PH167/version/334/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH167', '334', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
334	Eye infections	ieuan.scanlon	2021-10-06	currently shown