Phenotype Library | phenotype: Fatty Liver

Fatty Liver

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH168

Version ID

336

Type

Disease or Syndrome

Data Sources

CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

♀ Female ♂ Male

Agreement Date

2019-05-20

Coding system

Read codes v2 ICD10 codes Med codes

Collections

CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Fatty Liver' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

'Fatty Liver' diagnosis or history of diagnosis or procedure during a consultation

OR Secondary care

ALL diagnoses of 'Fatty Liver' or history of diagnosis during a hospitalization

Implementation

PhenoFlow Implementation:

https://kclhi.org/phenoflow/phenotype/download/487

Publications

Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

CSV

JSON

XML

Expand All / Collapse All

C1161/3461 Fatty Liver - Primary care - Read codes v2

Rows: 5

Code	Description	Disease	Medcode	Category
J610.00	Alcoholic fatty liver	Fatty Liver	10691.0	Diagnosis of Fatty Liver
J61y700	Steatosis of liver	Fatty Liver	10572.0	Diagnosis of Fatty Liver
J61y800	Nonalcoholic steatohepatitis	Fatty Liver	98148.0	Diagnosis of Fatty Liver
J61y900	Fatty change of liver	Fatty Liver	103466.0	Diagnosis of Fatty Liver
J61y911	Fatty liver	Fatty Liver	103706.0	Diagnosis of Fatty Liver

C1162/3463 Fatty Liver - Primary care - Med codes

Rows: 5

Code	Description	Disease	ReadcodeDescr	Readcode
103466.0	Diagnosis of Fatty Liver	Fatty Liver	Fatty change of liver	J61y900
103706.0	Diagnosis of Fatty Liver	Fatty Liver	Fatty liver	J61y911
10572.0	Diagnosis of Fatty Liver	Fatty Liver	Steatosis of liver	J61y700
10691.0	Diagnosis of Fatty Liver	Fatty Liver	Alcoholic fatty liver	J610.00
98148.0	Diagnosis of Fatty Liver	Fatty Liver	Nonalcoholic steatohepatitis	J61y800

C1163/3465 Fatty Liver - Secondary care - Diagnoses - ICD10 codes

Rows: 3

Code	Description	Disease	Category
K70.0	Alcoholic fatty liver	Fatty Liver	Diagnosis of Fatty Liver
K75.8	Other specified inflammatory liver diseases	Fatty Liver	Diagnosis of Fatty Liver
K76.0	Fatty (change of) liver, not elsewhere classified	Fatty Liver	Diagnosis of Fatty Liver

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH168/version/336/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH168/version/336/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH168', '336', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH168/version/336/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH168/version/336/export/codes/?format=json
CSV	site_root/phenotypes/PH168/version/336/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH168', '336', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
336	Fatty Liver	ieuan.scanlon	2021-10-06	currently shown