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Fatty Liver

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH168
Version ID
336
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Fatty Liver' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. 'Fatty Liver' diagnosis or history of diagnosis or procedure during a consultation

OR Secondary care

  1. ALL diagnoses of 'Fatty Liver' or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 5
Code Description Disease Medcode Category
J610.00 Alcoholic fatty liver Fatty Liver 10691.0 Diagnosis of Fatty Liver
J61y700 Steatosis of liver Fatty Liver 10572.0 Diagnosis of Fatty Liver
J61y800 Nonalcoholic steatohepatitis Fatty Liver 98148.0 Diagnosis of Fatty Liver
J61y900 Fatty change of liver Fatty Liver 103466.0 Diagnosis of Fatty Liver
J61y911 Fatty liver Fatty Liver 103706.0 Diagnosis of Fatty Liver
Rows: 5
Code Description Disease ReadcodeDescr Readcode
103466.0 Diagnosis of Fatty Liver Fatty Liver Fatty change of liver J61y900
103706.0 Diagnosis of Fatty Liver Fatty Liver Fatty liver J61y911
10572.0 Diagnosis of Fatty Liver Fatty Liver Steatosis of liver J61y700
10691.0 Diagnosis of Fatty Liver Fatty Liver Alcoholic fatty liver J610.00
98148.0 Diagnosis of Fatty Liver Fatty Liver Nonalcoholic steatohepatitis J61y800
Rows: 3
Code Description Disease Category
K70.0 Alcoholic fatty liver Fatty Liver Diagnosis of Fatty Liver
K75.8 Other specified inflammatory liver diseases Fatty Liver Diagnosis of Fatty Liver
K76.0 Fatty (change of) liver, not elsewhere classified Fatty Liver Diagnosis of Fatty Liver

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH168/version/336/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH168/version/336/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH168', '336', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH168/version/336/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH168/version/336/export/codes/?format=json
CSV site_root/phenotypes/PH168/version/336/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH168', '336', api_client=client)

Version History

Version
ID
Name Owner Publish date
336 Fatty Liver ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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