Phenotypes > Female infertility

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Female infertility

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

ID
PH170
Version ID
340
Type
Disease or Syndrome
Data Sources
CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD
Valid event data range
01/01/1999 - 01/07/2016
Sex
♀  Female ♂  Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Collections
CALIBER Phenotype Library
Tags
No tags

Definition

At the specified date, a patient is defined as having had 'Female infertility' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. 'Female infertility' diagnosis or history of diagnosis during a consultation

OR

  1. 'Female infertility' possible diagnosis during a consultation IF patient = female OR Secondary care

  2. ALL diagnoses of 'Female infertility' or history of diagnosis during a hospitalization

Implementation


https://kclhi.org/phenoflow/phenotype/download/493

Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Expand All  /  Collapse All
Rows: 35
Code Description Disease Medcode Category
K26y300 Infertility due to radiation Female infertility 101598.0 Possible diagnosis of Female Infertility
K26y400 Infertility in systemic disease Female infertility 108577.0 Possible diagnosis of Female Infertility
K5B..00 Infertility - female Female infertility 1808.0 Diagnosis of Female Infertility
K5B0.00 Female infertility of anovulatory origin Female infertility 4977.0 Diagnosis of Female Infertility
K5B0.11 Anovular cycle Female infertility 16360.0 Diagnosis of Female Infertility
K5B0000 Primary anovulatory infertility Female infertility 52132.0 Diagnosis of Female Infertility
K5B0100 Secondary anovulatory infertility Female infertility 50116.0 Diagnosis of Female Infertility
K5B0z00 Female infertility of anovulatory origin NOS Female infertility 63421.0 Diagnosis of Female Infertility
K5B1.00 Female infertility of pituitary - hypothalamic origin Female infertility 69884.0 Diagnosis of Female Infertility
K5B1000 Primary pituitary - hypothalamic infertility Female infertility 94448.0 Possible diagnosis of Female Infertility
K5B1100 Secondary pituitary - hypothalamic infertility Female infertility 99535.0 Possible diagnosis of Female Infertility
K5B1z00 Female infertility of pituitary - hypothalamic cause NOS Female infertility 62084.0 Diagnosis of Female Infertility
K5B2.00 Female infertility of tubal origin Female infertility 35074.0 Diagnosis of Female Infertility
K5B2000 Primary tubal infertility Female infertility 60861.0 Diagnosis of Female Infertility
K5B2100 Secondary tubal infertility Female infertility 45985.0 Diagnosis of Female Infertility
K5B2300 Blocked fallopian tube Female infertility 8352.0 Diagnosis of Female Infertility
K5B2z00 Female infertility of tubal origin NOS Female infertility 25077.0 Diagnosis of Female Infertility
K5B3.00 Female infertility of uterine origin Female infertility 61299.0 Diagnosis of Female Infertility
K5B3000 Primary uterine infertility Female infertility 91280.0 Diagnosis of Female Infertility
K5B3100 Secondary uterine infertility Female infertility 73151.0 Diagnosis of Female Infertility
K5B3z00 Female infertility of uterine origin NOS Female infertility 68664.0 Diagnosis of Female Infertility
K5B4.00 Female infertility of cervical origin Female infertility 62698.0 Diagnosis of Female Infertility
K5B4000 Primary cervical infertility Female infertility 97461.0 Diagnosis of Female Infertility
K5B4100 Secondary cervical infertility Female infertility 69324.0 Diagnosis of Female Infertility
K5B5.00 Female infertility of vaginal origin Female infertility 48461.0 Diagnosis of Female Infertility
K5B5100 Secondary vaginal infertility Female infertility 96463.0 Diagnosis of Female Infertility
K5B6.00 Female infertility associated with male factors Female infertility 54282.0 Diagnosis of Female Infertility
K5B7.00 Female infertility due to diminished ovarian reserve Female infertility 104569.0 Diagnosis of Female Infertility
K5By.00 Other female infertility Female infertility 36458.0 Diagnosis of Female Infertility
K5By000 Primary infertility unspecified Female infertility 2014.0 Possible diagnosis of Female Infertility
K5By100 Secondary infertility unspecified Female infertility 1943.0 Possible diagnosis of Female Infertility
K5Byz00 Other female infertility NOS Female infertility 53018.0 Diagnosis of Female Infertility
K5Byz11 Subfertility Female infertility 7246.0 Possible diagnosis of Female Infertility
K5Bz.00 Female infertility NOS Female infertility 30392.0 Diagnosis of Female Infertility
Kyu9G00 [X]Female infertility of other origin Female infertility 99069.0 Diagnosis of Female Infertility
Rows: 35
Code Description Disease ReadcodeDescr Readcode
101598.0 Possible diagnosis of Female Infertility Female infertility Infertility due to radiation K26y300
104569.0 Diagnosis of Female Infertility Female infertility Female infertility due to diminished ovarian reserve K5B7.00
108577.0 Possible diagnosis of Female Infertility Female infertility Infertility in systemic disease K26y400
16360.0 Diagnosis of Female Infertility Female infertility Anovular cycle K5B0.11
1808.0 Diagnosis of Female Infertility Female infertility Infertility - female K5B..00
1943.0 Possible diagnosis of Female Infertility Female infertility Secondary infertility unspecified K5By100
2014.0 Possible diagnosis of Female Infertility Female infertility Primary infertility unspecified K5By000
25077.0 Diagnosis of Female Infertility Female infertility Female infertility of tubal origin NOS K5B2z00
30392.0 Diagnosis of Female Infertility Female infertility Female infertility NOS K5Bz.00
35074.0 Diagnosis of Female Infertility Female infertility Female infertility of tubal origin K5B2.00
36458.0 Diagnosis of Female Infertility Female infertility Other female infertility K5By.00
45985.0 Diagnosis of Female Infertility Female infertility Secondary tubal infertility K5B2100
48461.0 Diagnosis of Female Infertility Female infertility Female infertility of vaginal origin K5B5.00
4977.0 Diagnosis of Female Infertility Female infertility Female infertility of anovulatory origin K5B0.00
50116.0 Diagnosis of Female Infertility Female infertility Secondary anovulatory infertility K5B0100
52132.0 Diagnosis of Female Infertility Female infertility Primary anovulatory infertility K5B0000
53018.0 Diagnosis of Female Infertility Female infertility Other female infertility NOS K5Byz00
54282.0 Diagnosis of Female Infertility Female infertility Female infertility associated with male factors K5B6.00
60861.0 Diagnosis of Female Infertility Female infertility Primary tubal infertility K5B2000
61299.0 Diagnosis of Female Infertility Female infertility Female infertility of uterine origin K5B3.00
62084.0 Diagnosis of Female Infertility Female infertility Female infertility of pituitary - hypothalamic cause NOS K5B1z00
62698.0 Diagnosis of Female Infertility Female infertility Female infertility of cervical origin K5B4.00
63421.0 Diagnosis of Female Infertility Female infertility Female infertility of anovulatory origin NOS K5B0z00
68664.0 Diagnosis of Female Infertility Female infertility Female infertility of uterine origin NOS K5B3z00
69324.0 Diagnosis of Female Infertility Female infertility Secondary cervical infertility K5B4100
69884.0 Diagnosis of Female Infertility Female infertility Female infertility of pituitary - hypothalamic origin K5B1.00
7246.0 Possible diagnosis of Female Infertility Female infertility Subfertility K5Byz11
73151.0 Diagnosis of Female Infertility Female infertility Secondary uterine infertility K5B3100
8352.0 Diagnosis of Female Infertility Female infertility Blocked fallopian tube K5B2300
91280.0 Diagnosis of Female Infertility Female infertility Primary uterine infertility K5B3000
94448.0 Possible diagnosis of Female Infertility Female infertility Primary pituitary - hypothalamic infertility K5B1000
96463.0 Diagnosis of Female Infertility Female infertility Secondary vaginal infertility K5B5100
97461.0 Diagnosis of Female Infertility Female infertility Primary cervical infertility K5B4000
99069.0 Diagnosis of Female Infertility Female infertility [X]Female infertility of other origin Kyu9G00
99535.0 Possible diagnosis of Female Infertility Female infertility Secondary pituitary - hypothalamic infertility K5B1100
Rows: 1
Code Description Disease Category
N97 Female infertility Female infertility Diagnosis of Female Infertility

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH170/version/340/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH170/version/340/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH170', '340', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH170/version/340/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH170/version/340/export/codes/?format=json
CSV site_root/phenotypes/PH170/version/340/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH170', '340', api_client=client)

Version History

Version
ID		 Name Owner Publish date
340 Female infertility ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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