Phenotype Library | phenotype: Folate deficiency anaemia

Folate deficiency anaemia

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH172

Version ID

344

Type

Disease or Syndrome

Data Sources

CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

♀ Female ♂ Male

Agreement Date

2019-05-20

Coding system

Read codes v2 ICD10 codes Med codes

Collections

CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Folate deficiency anaemia' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

Folate deficiency anaemia diagnosis or history of diagnosis during a consultation

OR Secondary care (ICD10)

ALL diagnoses of 'Folate deficiency anaemia' or history of diagnosis during a hospitalization

Implementation

PhenoFlow Implementation:

https://kclhi.org/phenoflow/phenotype/download/500

Publications

Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

CSV

JSON

XML

Expand All / Collapse All

C1174/3487 Folate deficiency anaemia - Primary care - Read codes v2

Rows: 11

Code	Description	Disease	Medcode	Category
C262000	Folic acid deficiency	Folate deficiency anaemia	4078	Folic acid deficiency
D012.00	Folate-deficiency anaemia	Folate deficiency anaemia	4080	Diagnosis of Folate deficiency anaemia
D012.11	Folic acid deficiency anaemia	Folate deficiency anaemia	24870	Diagnosis of Folate deficiency anaemia
D012100	Folate-deficiency anaemia due to dietary causes	Folate deficiency anaemia	36634	Diagnosis of Folate deficiency anaemia
D012111	Goat's milk anaemia	Folate deficiency anaemia	98709	Diagnosis of Folate deficiency anaemia
D012200	Folate-deficiency anaemia, drug induced	Folate deficiency anaemia	37082	Diagnosis of Folate deficiency anaemia
D012300	Folate-deficiency anaemia due to malabsorption	Folate deficiency anaemia	55481	Diagnosis of Folate deficiency anaemia
D012400	Folate-deficiency anaemia due to liver disorders	Folate deficiency anaemia	56114	Diagnosis of Folate deficiency anaemia
D012z00	Folate-deficiency anaemia NOS	Folate deficiency anaemia	42117	Diagnosis of Folate deficiency anaemia
D013000	Combined B12 and folate deficiency anaemia	Folate deficiency anaemia	22715	Diagnosis of Folate deficiency anaemia
Dyu0300	[X]Other folate deficiency anaemias	Folate deficiency anaemia	53783	Diagnosis of Folate deficiency anaemia

C1175/3489 Folate deficiency anaemia - Primary care - Med codes

Rows: 11

Code	Description	Disease	ReadcodeDescr	Readcode
22715	Diagnosis of Folate deficiency anaemia	Folate deficiency anaemia	Combined B12 and folate deficiency anaemia	D013000
24870	Diagnosis of Folate deficiency anaemia	Folate deficiency anaemia	Folic acid deficiency anaemia	D012.11
36634	Diagnosis of Folate deficiency anaemia	Folate deficiency anaemia	Folate-deficiency anaemia due to dietary causes	D012100
37082	Diagnosis of Folate deficiency anaemia	Folate deficiency anaemia	Folate-deficiency anaemia, drug induced	D012200
4078	Folic acid deficiency	Folate deficiency anaemia	Folic acid deficiency	C262000
4080	Diagnosis of Folate deficiency anaemia	Folate deficiency anaemia	Folate-deficiency anaemia	D012.00
42117	Diagnosis of Folate deficiency anaemia	Folate deficiency anaemia	Folate-deficiency anaemia NOS	D012z00
53783	Diagnosis of Folate deficiency anaemia	Folate deficiency anaemia	[X]Other folate deficiency anaemias	Dyu0300
55481	Diagnosis of Folate deficiency anaemia	Folate deficiency anaemia	Folate-deficiency anaemia due to malabsorption	D012300
56114	Diagnosis of Folate deficiency anaemia	Folate deficiency anaemia	Folate-deficiency anaemia due to liver disorders	D012400
98709	Diagnosis of Folate deficiency anaemia	Folate deficiency anaemia	Goat's milk anaemia	D012111

C1176/3491 Folate deficiency anaemia - Secondary care - Diagnoses - ICD10 codes

Rows: 1

Code	Description	Disease	Category
D52	Folate deficiency anaemia	Folate deficiency anaemia	Diagnosis of Folate deficiency anaemia

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH172/version/344/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH172/version/344/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH172', '344', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH172/version/344/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH172/version/344/export/codes/?format=json
CSV	site_root/phenotypes/PH172/version/344/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH172', '344', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
344	Folate deficiency anaemia	ieuan.scanlon	2021-10-06	currently shown