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Folate deficiency anaemia

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH172
Version ID
344
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Folate deficiency anaemia' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. Folate deficiency anaemia diagnosis or history of diagnosis during a consultation

OR Secondary care (ICD10)

  1. ALL diagnoses of 'Folate deficiency anaemia' or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 11
Code Description Disease Medcode Category
C262000 Folic acid deficiency Folate deficiency anaemia 4078 Folic acid deficiency
D012.00 Folate-deficiency anaemia Folate deficiency anaemia 4080 Diagnosis of Folate deficiency anaemia
D012.11 Folic acid deficiency anaemia Folate deficiency anaemia 24870 Diagnosis of Folate deficiency anaemia
D012100 Folate-deficiency anaemia due to dietary causes Folate deficiency anaemia 36634 Diagnosis of Folate deficiency anaemia
D012111 Goat's milk anaemia Folate deficiency anaemia 98709 Diagnosis of Folate deficiency anaemia
D012200 Folate-deficiency anaemia, drug induced Folate deficiency anaemia 37082 Diagnosis of Folate deficiency anaemia
D012300 Folate-deficiency anaemia due to malabsorption Folate deficiency anaemia 55481 Diagnosis of Folate deficiency anaemia
D012400 Folate-deficiency anaemia due to liver disorders Folate deficiency anaemia 56114 Diagnosis of Folate deficiency anaemia
D012z00 Folate-deficiency anaemia NOS Folate deficiency anaemia 42117 Diagnosis of Folate deficiency anaemia
D013000 Combined B12 and folate deficiency anaemia Folate deficiency anaemia 22715 Diagnosis of Folate deficiency anaemia
Dyu0300 [X]Other folate deficiency anaemias Folate deficiency anaemia 53783 Diagnosis of Folate deficiency anaemia
Rows: 11
Code Description Disease ReadcodeDescr Readcode
22715 Diagnosis of Folate deficiency anaemia Folate deficiency anaemia Combined B12 and folate deficiency anaemia D013000
24870 Diagnosis of Folate deficiency anaemia Folate deficiency anaemia Folic acid deficiency anaemia D012.11
36634 Diagnosis of Folate deficiency anaemia Folate deficiency anaemia Folate-deficiency anaemia due to dietary causes D012100
37082 Diagnosis of Folate deficiency anaemia Folate deficiency anaemia Folate-deficiency anaemia, drug induced D012200
4078 Folic acid deficiency Folate deficiency anaemia Folic acid deficiency C262000
4080 Diagnosis of Folate deficiency anaemia Folate deficiency anaemia Folate-deficiency anaemia D012.00
42117 Diagnosis of Folate deficiency anaemia Folate deficiency anaemia Folate-deficiency anaemia NOS D012z00
53783 Diagnosis of Folate deficiency anaemia Folate deficiency anaemia [X]Other folate deficiency anaemias Dyu0300
55481 Diagnosis of Folate deficiency anaemia Folate deficiency anaemia Folate-deficiency anaemia due to malabsorption D012300
56114 Diagnosis of Folate deficiency anaemia Folate deficiency anaemia Folate-deficiency anaemia due to liver disorders D012400
98709 Diagnosis of Folate deficiency anaemia Folate deficiency anaemia Goat's milk anaemia D012111
Rows: 1
Code Description Disease Category
D52 Folate deficiency anaemia Folate deficiency anaemia Diagnosis of Folate deficiency anaemia

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH172/version/344/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH172/version/344/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH172', '344', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH172/version/344/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH172/version/344/export/codes/?format=json
CSV site_root/phenotypes/PH172/version/344/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH172', '344', api_client=client)

Version History

Version
ID
Name Owner Publish date
344 Folate deficiency anaemia ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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