Confirmed COVID-19 (GDPPR)

PH1777 / 3716

Samantha Ip, Fatemeh Torabi, Spiros Denaxas, Ashley Akbari, Hoda Abbasizanjani, Rochelle Knight, Jennifer Cooper, Rachel Denholm, Spencer Keene, Thomas Bolton, Sam Hollings, Efosa Omigie, Teri-Louise North, Arun Karthikeyan Suseeladevi, Emanuele Di Angelantonio, Kamlesh Khunti, Jonathan A C Sterne, Cathie Sudlow, William Whiteley, Angela Wood, Venexia Walker, British Heart Foundation Data Science Centre (Health Data Research UK) CVD-COVID-UK/COVID-IMPACT Consortium

Apr 15, 2025

BHF Data Science Centre Phenotype

  1. Overview

    Project Name
    CCU002_03
    Phenotype Type
    Disease or syndrome
    Sex
    Both
    Valid Event Date Range
    No data
    Coding System
    SNOMED CT codes
    Data Sources
    GPES Data for Pandemic Planning and Research (COVID-19)
    Ontology
    No data
    Collections
    BHF Data Science CentrePhenotype Library
    Tags
    COVID-19

  2. Definition

    Definition

    No data

    Clinical Trials

    No Trials

    Endorsements

    No endorsement

  3. Implementation

    Implementation

    No data

  4. Clinical Codelist

  5. Publication

    Related publications

    • Samantha Ip, Fatemeh Torabi, Spiros Denaxas, Ashley Akbari, Hoda Abbasizanjani, Rochelle Knight, Jennifer Cooper, Rachel Denholm, Spencer Keene, Thomas Bolton, Sam Hollings, Efosa Omigie, Teri-Louise North, Arun Karthikeyan Suseeladevi, Emanuele Di Angelantonio, Kamlesh Khunti, Jonathan A C Sterne, Cathie Sudlow, William Whiteley, Angela Wood, Venexia Walker, British Heart Foundation Data Science Centre (Health Data Research UK) CVD-COVID-UK/COVID-IMPACT Consortium. Risk of myocarditis and pericarditis following BNT162b2 and ChAdOx1 COVID-19 vaccinations. medRxiv

      (DOI: 10.1101/2022.03.06.21267462)

    Citation Example

    Samantha Ip, Fatemeh Torabi, Spiros Denaxas, Ashley Akbari, Hoda Abbasizanjani, Rochelle Knight, Jennifer Cooper, Rachel Denholm, Spencer Keene, Thomas Bolton, Sam Hollings, Efosa Omigie, Teri-Louise North, Arun Karthikeyan Suseeladevi, Emanuele Di Angelantonio, Kamlesh Khunti, Jonathan A C Sterne, Cathie Sudlow, William Whiteley, Angela Wood, Venexia Walker, British Heart Foundation Data Science Centre (Health Data Research UK) CVD-COVID-UK/COVID-IMPACT Consortium. PH1777 / 3716 - Confirmed COVID-19 (GDPPR). Phenotype Library [Online]. 15 April 2025. Available from: http://phenotypes.healthdatagateway.org/phenotypes/PH1777/version/3716/detail/. [Accessed 21 February 2026]

  6. API

    To Export Phenotype Details:

    FormatAPI
    JSON site_root/api/v1/phenotypes/PH1777/version/3716/detail/?format=json
    R Package

    # Download here

    library(ConceptLibraryClient)


    # Connect to API

    client = ConceptLibraryClient::Connection$new(public=TRUE)


    # Get details of Phenotype

    phenotype_details = client$phenotypes$get_detail(
     'PH1777',
     version_id=3716
    )

    Py Package

    # Download here

    from pyconceptlibraryclient import Client


    # Connect to API

    client = Client(public=True)


    # Get details of Phenotype

    phenotype_detail = client.phenotypes.get_detail(
     'PH1777',
     version_id=3716
    )

    To Export Phenotype Code List:

    FormatAPI
    JSON site_root/api/v1/phenotypes/PH1777/version/3716/export/codes/?format=json
    R Package

    # Download here

    library(ConceptLibraryClient)


    # Connect to API

    client = ConceptLibraryClient::Connection$new(public=TRUE)


    # Get codelist of Phenotype

    phenotype_codelist = client$phenotypes$get_codelist(
     'PH1777',
     version_id=3716
    )

    Py Package

    # Download here

    from pyconceptlibraryclient import Client


    # Connect to API

    client = Client(public=True)


    # Get codelist of Phenotype

    phenotype_codelist = client.phenotypes.get_codelist(
     'PH1777',
     version_id=3716
    )

  7. Version History

    Version IDNameOwnerPublish date
    Confirmed COVID-19 (GDPPR) jadene.lewis2025-04-23 10:16