Phenotype Library | phenotype: Infections of the Heart

Infections of the Heart

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH179

Version ID

358

Type

Disease or Syndrome

Data Sources

HES Admitted Patient Care data for CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

♀ Female ♂ Male

Agreement Date

2019-05-20

Coding system

ICD10 codes

Collections

CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had Infections of the Heart IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Secondary care

ALL diagnoses of Infections of the Heart or history of diagnosis during a hospitalization

Implementation

PhenoFlow Implementation:

https://kclhi.org/phenoflow/phenotype/download/520

Publications

Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

CSV

JSON

XML

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C1197/3533 Infections of the Heart - Secondary care - Diagnoses - ICD10 codes

Rows: 15

Code	Description	Disease	Category
A39.5	Meningococcal heart disease	Infections of the Heart	Diagnosis of Infections of the Heart
A52.0	Cardiovascular syphilis	Infections of the Heart	Diagnosis of Infections of the Heart
B33.2	Viral carditis	Infections of the Heart	Diagnosis of Infections of the Heart
B37.6	Candidal endocarditis	Infections of the Heart	Diagnosis of Infections of the Heart
I30.1	Infective pericarditis	Infections of the Heart	Diagnosis of Infections of the Heart
I32.0	Pericarditis in bacterial diseases classified elsewhere	Infections of the Heart	Diagnosis of Infections of the Heart
I32.1	Pericarditis in other infectious and parasitic diseases classified elsewhere	Infections of the Heart	Diagnosis of Infections of the Heart
I33.0	Acute and subacute infective endocarditis	Infections of the Heart	Diagnosis of Infections of the Heart
I40.0	Infective myocarditis	Infections of the Heart	Diagnosis of Infections of the Heart
I41.0	Myocarditis in bacterial diseases classified elsewhere	Infections of the Heart	Diagnosis of Infections of the Heart
I41.1	Myocarditis in viral diseases classified elsewhere	Infections of the Heart	Diagnosis of Infections of the Heart
I41.2	Myocarditis in other infectious and parasitic diseases classified elsewhere	Infections of the Heart	Diagnosis of Infections of the Heart
I43.0	Cardiomyopathy in infectious and parasitic diseases classified elsewhere	Infections of the Heart	Diagnosis of Infections of the Heart
I98.0	Cardiovascular syphilis	Infections of the Heart	Diagnosis of Infections of the Heart
I98.1	Cardiovascular disorders in other infectious and parasitic diseases classified elsewhere	Infections of the Heart	Diagnosis of Infections of the Heart

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH179/version/358/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH179/version/358/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH179', '358', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH179/version/358/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH179/version/358/export/codes/?format=json
CSV	site_root/phenotypes/PH179/version/358/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH179', '358', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
358	Infections of the Heart	ieuan.scanlon	2021-10-06	currently shown