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Infections of the Heart

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH179
Version ID
358
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
ICD10 codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had Infections of the Heart IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Secondary care

  1. ALL diagnoses of Infections of the Heart or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 15
Code Description Disease Category
A39.5 Meningococcal heart disease Infections of the Heart Diagnosis of Infections of the Heart
A52.0 Cardiovascular syphilis Infections of the Heart Diagnosis of Infections of the Heart
B33.2 Viral carditis Infections of the Heart Diagnosis of Infections of the Heart
B37.6 Candidal endocarditis Infections of the Heart Diagnosis of Infections of the Heart
I30.1 Infective pericarditis Infections of the Heart Diagnosis of Infections of the Heart
I32.0 Pericarditis in bacterial diseases classified elsewhere Infections of the Heart Diagnosis of Infections of the Heart
I32.1 Pericarditis in other infectious and parasitic diseases classified elsewhere Infections of the Heart Diagnosis of Infections of the Heart
I33.0 Acute and subacute infective endocarditis Infections of the Heart Diagnosis of Infections of the Heart
I40.0 Infective myocarditis Infections of the Heart Diagnosis of Infections of the Heart
I41.0 Myocarditis in bacterial diseases classified elsewhere Infections of the Heart Diagnosis of Infections of the Heart
I41.1 Myocarditis in viral diseases classified elsewhere Infections of the Heart Diagnosis of Infections of the Heart
I41.2 Myocarditis in other infectious and parasitic diseases classified elsewhere Infections of the Heart Diagnosis of Infections of the Heart
I43.0 Cardiomyopathy in infectious and parasitic diseases classified elsewhere Infections of the Heart Diagnosis of Infections of the Heart
I98.0 Cardiovascular syphilis Infections of the Heart Diagnosis of Infections of the Heart
I98.1 Cardiovascular disorders in other infectious and parasitic diseases classified elsewhere Infections of the Heart Diagnosis of Infections of the Heart

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH179/version/358/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH179/version/358/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH179', '358', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH179/version/358/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH179/version/358/export/codes/?format=json
CSV site_root/phenotypes/PH179/version/358/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH179', '358', api_client=client)

Version History

Version
ID
Name Owner Publish date
358 Infections of the Heart ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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