Phenotypes > HIV

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HIV

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

ID
PH184
Version ID
368
Type
Disease or Syndrome
Data Sources
CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD
Valid event data range
01/01/1999 - 01/07/2016
Sex
♀  Female ♂  Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Collections
CALIBER Phenotype Library
Tags
No tags

Definition

At the specified date, a patient is defined as having had 'HIV' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. 'HIV' diagnosis or history of diagnosis during a consultation

OR Secondary care

  1. ALL diagnoses of 'HIV' or history of diagnosis during a hospitalization

Implementation


https://kclhi.org/phenoflow/phenotype/download/532

Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Expand All  /  Collapse All
Rows: 48
Code Description Disease Medcode Category
43C3.11 HIV positive HIV 2835.0 Diagnosis of HIV
4J34.00 HIV viral load HIV 27053.0 Diagnosis of HIV
4J3F.00 Human immunodeficiency virus viral load by log rank HIV 96902.0 Diagnosis of HIV
65QA.00 AIDS carrier HIV 23763.0 History of HIV
65VE.00 Notification of AIDS HIV 33943.0 History of HIV
66j..00 Human immunodeficiency virus monitoring HIV 98966.0 History of HIV
66j0.00 Human immunodeficiency virus annual review HIV 101191.0 History of HIV
9kl..00 HIV pos gen health check serv declind - enhanc service admin HIV 105040.0 History of HIV
A788.00 Acquired immune deficiency syndrome HIV 23770.0 Diagnosis of HIV
A788.11 Human immunodeficiency virus infection HIV 9130.0 Diagnosis of HIV
A788000 Acute human immunodeficiency virus infection HIV 58857.0 Diagnosis of HIV
A788100 Asymptomatic human immunodeficiency virus infection HIV 58859.0 Diagnosis of HIV
A788200 HIV infection with persistent generalised lymphadenopathy HIV 69766.0 Diagnosis of HIV
A788300 Human immunodeficiency virus with constitutional disease HIV 70869.0 Diagnosis of HIV
A788400 Human immunodeficiency virus with neurological disease HIV 53636.0 Diagnosis of HIV
A788500 Human immunodeficiency virus with secondary infection HIV 70528.0 Diagnosis of HIV
A788600 Human immunodeficiency virus with secondary cancers HIV 101836.0 Diagnosis of HIV
A788U00 HIV disease result/haematological+immunologic abnorms,NEC HIV 47632.0 Diagnosis of HIV
A788W00 HIV disease resulting in unspecified malignant neoplasm HIV 67575.0 Diagnosis of HIV
A788X00 HIV disease resulting/unspcf infectious+parasitic disease HIV 71450.0 Diagnosis of HIV
A788y00 Human immunodeficiency virus with other clinical findings HIV 62891.0 Diagnosis of HIV
A788z00 Acquired human immunodeficiency virus infection syndrome NOS HIV 36294.0 Diagnosis of HIV
A789.00 Human immunodef virus resulting in other disease HIV 44303.0 Diagnosis of HIV
A789000 HIV disease resulting in mycobacterial infection HIV 37006.0 Diagnosis of HIV
A789100 HIV disease resulting in cytomegaloviral disease HIV 66368.0 Diagnosis of HIV
A789200 HIV disease resulting in candidiasis HIV 23951.0 Diagnosis of HIV
A789300 HIV disease resulting in Pneumocystis carinii pneumonia HIV 27641.0 Diagnosis of HIV
A789311 HIV disease resulting in Pneumocystis jirovecii pneumonia HIV 104717.0 Diagnosis of HIV
A789400 HIV disease resulting in multiple infections HIV 50076.0 Diagnosis of HIV
A789500 HIV disease resulting in Kaposi's sarcoma HIV 27853.0 Diagnosis of HIV
A789511 HIV disease resulting in Kaposi sarcoma HIV 108054.0 Diagnosis of HIV
A789600 HIV disease resulting in Burkitt's lymphoma HIV 44617.0 Diagnosis of HIV
A789700 HIV dis resulting oth types of non-Hodgkin's lymphoma HIV 66367.0 Diagnosis of HIV
A789800 HIV disease resulting in multiple malignant neoplasms HIV 105324.0 Diagnosis of HIV
A789900 HIV disease resulting in lymphoid interstitial pneumonitis HIV 65117.0 Diagnosis of HIV
A789A00 HIV disease resulting in wasting syndrome HIV 8281.0 Diagnosis of HIV
A789X00 HIV dis reslt/oth mal neopl/lymph,h'matopoetc+reltd tissu HIV 51708.0 Diagnosis of HIV
AyuC.00 [X]Human immunodeficiency virus disease HIV 62854.0 Diagnosis of HIV
AyuC100 [X]HIV disease resulting in other viral infections HIV 107807.0 Diagnosis of HIV
AyuC300 [X]HIV disease resulting in multiple infections HIV 102117.0 Diagnosis of HIV
AyuC400 [X]HIV disease resulting/other infectious+parasitic diseases HIV 104134.0 Diagnosis of HIV
AyuC600 [X]HIV disease resulting in other non-Hodgkin's lymphoma HIV 69767.0 Diagnosis of HIV
AyuCB00 [X]HIV disease result/haematological+immunologic abnorms,NEC HIV 96751.0 Diagnosis of HIV
AyuCC00 [X]HIV disease resulting in other specified conditions HIV 102252.0 Diagnosis of HIV
AyuCD00 [X]Unspecified human immunodeficiency virus [HIV] disease HIV 100769.0 Diagnosis of HIV
Eu02400 [X]Dementia in human immunodef virus [HIV] disease HIV 41185.0 Diagnosis of HIV
R109.00 [D]Laboratory evidence of human immunodeficiency virus [HIV] HIV 44288.0 Diagnosis of HIV
ZV01A00 [V]Asymptomatic human immunodeficency virus infection status HIV 24872.0 Diagnosis of HIV
Rows: 48
Code Description Disease ReadcodeDescr Readcode
100769.0 Diagnosis of HIV HIV [X]Unspecified human immunodeficiency virus [HIV] disease AyuCD00
101191.0 History of HIV HIV Human immunodeficiency virus annual review 66j0.00
101836.0 Diagnosis of HIV HIV Human immunodeficiency virus with secondary cancers A788600
102117.0 Diagnosis of HIV HIV [X]HIV disease resulting in multiple infections AyuC300
102252.0 Diagnosis of HIV HIV [X]HIV disease resulting in other specified conditions AyuCC00
104134.0 Diagnosis of HIV HIV [X]HIV disease resulting/other infectious+parasitic diseases AyuC400
104717.0 Diagnosis of HIV HIV HIV disease resulting in Pneumocystis jirovecii pneumonia A789311
105040.0 History of HIV HIV HIV pos gen health check serv declind - enhanc service admin 9kl..00
105324.0 Diagnosis of HIV HIV HIV disease resulting in multiple malignant neoplasms A789800
107807.0 Diagnosis of HIV HIV [X]HIV disease resulting in other viral infections AyuC100
108054.0 Diagnosis of HIV HIV HIV disease resulting in Kaposi sarcoma A789511
23763.0 History of HIV HIV AIDS carrier 65QA.00
23770.0 Diagnosis of HIV HIV Acquired immune deficiency syndrome A788.00
23951.0 Diagnosis of HIV HIV HIV disease resulting in candidiasis A789200
24872.0 Diagnosis of HIV HIV [V]Asymptomatic human immunodeficency virus infection status ZV01A00
27053.0 Diagnosis of HIV HIV HIV viral load 4J34.00
27641.0 Diagnosis of HIV HIV HIV disease resulting in Pneumocystis carinii pneumonia A789300
27853.0 Diagnosis of HIV HIV HIV disease resulting in Kaposi's sarcoma A789500
2835.0 Diagnosis of HIV HIV HIV positive 43C3.11
33943.0 History of HIV HIV Notification of AIDS 65VE.00
36294.0 Diagnosis of HIV HIV Acquired human immunodeficiency virus infection syndrome NOS A788z00
37006.0 Diagnosis of HIV HIV HIV disease resulting in mycobacterial infection A789000
41185.0 Diagnosis of HIV HIV [X]Dementia in human immunodef virus [HIV] disease Eu02400
44288.0 Diagnosis of HIV HIV [D]Laboratory evidence of human immunodeficiency virus [HIV] R109.00
44303.0 Diagnosis of HIV HIV Human immunodef virus resulting in other disease A789.00
44617.0 Diagnosis of HIV HIV HIV disease resulting in Burkitt's lymphoma A789600
47632.0 Diagnosis of HIV HIV HIV disease result/haematological+immunologic abnorms,NEC A788U00
50076.0 Diagnosis of HIV HIV HIV disease resulting in multiple infections A789400
51708.0 Diagnosis of HIV HIV HIV dis reslt/oth mal neopl/lymph,h'matopoetc+reltd tissu A789X00
53636.0 Diagnosis of HIV HIV Human immunodeficiency virus with neurological disease A788400
58857.0 Diagnosis of HIV HIV Acute human immunodeficiency virus infection A788000
58859.0 Diagnosis of HIV HIV Asymptomatic human immunodeficiency virus infection A788100
62854.0 Diagnosis of HIV HIV [X]Human immunodeficiency virus disease AyuC.00
62891.0 Diagnosis of HIV HIV Human immunodeficiency virus with other clinical findings A788y00
65117.0 Diagnosis of HIV HIV HIV disease resulting in lymphoid interstitial pneumonitis A789900
66367.0 Diagnosis of HIV HIV HIV dis resulting oth types of non-Hodgkin's lymphoma A789700
66368.0 Diagnosis of HIV HIV HIV disease resulting in cytomegaloviral disease A789100
67575.0 Diagnosis of HIV HIV HIV disease resulting in unspecified malignant neoplasm A788W00
69766.0 Diagnosis of HIV HIV HIV infection with persistent generalised lymphadenopathy A788200
69767.0 Diagnosis of HIV HIV [X]HIV disease resulting in other non-Hodgkin's lymphoma AyuC600
70528.0 Diagnosis of HIV HIV Human immunodeficiency virus with secondary infection A788500
70869.0 Diagnosis of HIV HIV Human immunodeficiency virus with constitutional disease A788300
71450.0 Diagnosis of HIV HIV HIV disease resulting/unspcf infectious+parasitic disease A788X00
8281.0 Diagnosis of HIV HIV HIV disease resulting in wasting syndrome A789A00
9130.0 Diagnosis of HIV HIV Human immunodeficiency virus infection A788.11
96751.0 Diagnosis of HIV HIV [X]HIV disease result/haematological+immunologic abnorms,NEC AyuCB00
96902.0 Diagnosis of HIV HIV Human immunodeficiency virus viral load by log rank 4J3F.00
98966.0 History of HIV HIV Human immunodeficiency virus monitoring 66j..00
Rows: 8
Code Description Disease Category
B20 Human immunodeficiency virus [HIV] disease resulting in infectious and parasitic diseases HIV Diagnosis of HIV
B21 Human immunodeficiency virus [HIV] disease resulting in malignant neoplasms HIV Diagnosis of HIV
B22 Human immunodeficiency virus [HIV] disease resulting in other specified diseases HIV Diagnosis of HIV
B23 Human immunodeficiency virus [HIV] disease resulting in other conditions HIV Diagnosis of HIV
B24 Unspecified human immunodeficiency virus [HIV] disease HIV Diagnosis of HIV
F02.4 Dementia in human immunodeficiency virus [HIV] disease HIV Diagnosis of HIV
R75 Laboratory evidence of human immunodeficiency virus [HIV] HIV Diagnosis of HIV
Z21 Asymptomatic human immunodeficiency virus [HIV] infection status HIV Diagnosis of HIV

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH184/version/368/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH184/version/368/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH184', '368', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH184/version/368/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH184/version/368/export/codes/?format=json
CSV site_root/phenotypes/PH184/version/368/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH184', '368', api_client=client)

Version History

Version
ID		 Name Owner Publish date
368 HIV ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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