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Juvenile arthritis

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH196
Version ID
392
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Juvenile arthritis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. 'Juvenile arthritis' diagnosis or history of diagnosis during a consultation

OR Secondary care (ICD10)

  1. ALL diagnoses of 'Juvenile arthritis' or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 15
Code Description Disease Medcode Category
N043.00 Juvenile rheumatoid arthritis - Still's disease Juvenile arthritis 4186.0 Diagnosis of Juvenile arthritis
N043000 Juvenile rheumatoid arthropathy unspecified Juvenile arthritis 50644.0 Diagnosis of Juvenile arthritis
N043100 Acute polyarticular juvenile rheumatoid arthritis Juvenile arthritis 47831.0 Diagnosis of Juvenile arthritis
N043200 Pauciarticular juvenile rheumatoid arthritis Juvenile arthritis 21533.0 Diagnosis of Juvenile arthritis
N043300 Monarticular juvenile rheumatoid arthritis Juvenile arthritis 36276.0 Diagnosis of Juvenile arthritis
N043z00 Juvenile rheumatoid arthritis NOS Juvenile arthritis 27557.0 Diagnosis of Juvenile arthritis
N045.00 Other juvenile arthritis Juvenile arthritis 7196.0 Diagnosis of Juvenile arthritis
N045000 Juvenile ankylosing spondylitis Juvenile arthritis 42405.0 Diagnosis of Juvenile arthritis
N045100 Juvenile seronegative polyarthritis Juvenile arthritis 31181.0 Diagnosis of Juvenile arthritis
N045200 Juvenile arthritis in psoriasis Juvenile arthritis 28456.0 Diagnosis of Juvenile arthritis
N045300 Juvenile arthritis in Crohn's disease Juvenile arthritis 12575.0 Diagnosis of Juvenile arthritis
N045400 Juvenile arthritis in ulcerative colitis Juvenile arthritis 71083.0 Diagnosis of Juvenile arthritis
N045500 Juvenile rheumatoid arthritis Juvenile arthritis 31360.0 Diagnosis of Juvenile arthritis
N045600 Pauciarticular onset juvenile chronic arthritis Juvenile arthritis 46622.0 Diagnosis of Juvenile arthritis
Nyu1500 [X]Other juvenile arthritis Juvenile arthritis 94854.0 Diagnosis of Juvenile arthritis
Rows: 15
Code Description Disease ReadcodeDescr Readcode
12575.0 Diagnosis of Juvenile arthritis Juvenile arthritis Juvenile arthritis in Crohn's disease N045300
21533.0 Diagnosis of Juvenile arthritis Juvenile arthritis Pauciarticular juvenile rheumatoid arthritis N043200
27557.0 Diagnosis of Juvenile arthritis Juvenile arthritis Juvenile rheumatoid arthritis NOS N043z00
28456.0 Diagnosis of Juvenile arthritis Juvenile arthritis Juvenile arthritis in psoriasis N045200
31181.0 Diagnosis of Juvenile arthritis Juvenile arthritis Juvenile seronegative polyarthritis N045100
31360.0 Diagnosis of Juvenile arthritis Juvenile arthritis Juvenile rheumatoid arthritis N045500
36276.0 Diagnosis of Juvenile arthritis Juvenile arthritis Monarticular juvenile rheumatoid arthritis N043300
4186.0 Diagnosis of Juvenile arthritis Juvenile arthritis Juvenile rheumatoid arthritis - Still's disease N043.00
42405.0 Diagnosis of Juvenile arthritis Juvenile arthritis Juvenile ankylosing spondylitis N045000
46622.0 Diagnosis of Juvenile arthritis Juvenile arthritis Pauciarticular onset juvenile chronic arthritis N045600
47831.0 Diagnosis of Juvenile arthritis Juvenile arthritis Acute polyarticular juvenile rheumatoid arthritis N043100
50644.0 Diagnosis of Juvenile arthritis Juvenile arthritis Juvenile rheumatoid arthropathy unspecified N043000
71083.0 Diagnosis of Juvenile arthritis Juvenile arthritis Juvenile arthritis in ulcerative colitis N045400
7196.0 Diagnosis of Juvenile arthritis Juvenile arthritis Other juvenile arthritis N045.00
94854.0 Diagnosis of Juvenile arthritis Juvenile arthritis [X]Other juvenile arthritis Nyu1500
Rows: 2
Code Description Disease Category
M08 Juvenile arthritis Juvenile arthritis Diagnosis of Juvenile arthritis
M09 Juvenile arthritis in diseases classified elsewhere Juvenile arthritis Diagnosis of Juvenile arthritis

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH196/version/392/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH196/version/392/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH196', '392', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH196/version/392/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH196/version/392/export/codes/?format=json
CSV site_root/phenotypes/PH196/version/392/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH196', '392', api_client=client)

Version History

Version
ID
Name Owner Publish date
392 Juvenile arthritis ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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