Phenotype Library | phenotype: Infection of liver

Infection of liver

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH201

Version ID

402

Type

Disease or Syndrome

Data Sources

HES Admitted Patient Care data for CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

♀ Female ♂ Male

Agreement Date

2019-05-20

Coding system

ICD10 codes

Collections

CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had Infection of liver IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Secondary care

ALL diagnoses of Infection of liver or history of diagnosis during a hospitalization

Implementation

PhenoFlow Implementation:

https://kclhi.org/phenoflow/phenotype/download/580

Publications

Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

CSV

JSON

XML

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C1264/3667 Infection of liver - Secondary care - Diagnoses - ICD10 codes

Rows: 14

Code	Description	Disease	Category
A06.4	Amoebic liver abscess	Infection of liver	Diagnosis of Infection of liver
B15	Acute hepatitis A	Infection of liver	Diagnosis of Infection of liver
B16	Acute hepatitis B	Infection of liver	Diagnosis of Infection of liver
B17	Other acute viral hepatitis	Infection of liver	Diagnosis of Infection of liver
B18	Chronic viral hepatitis	Infection of liver	Diagnosis of Infection of liver
B19	Unspecified viral hepatitis	Infection of liver	Diagnosis of Infection of liver
B25.1	Cytomegaloviral hepatitis	Infection of liver	Diagnosis of Infection of liver
B58.1	Toxoplasma hepatitis	Infection of liver	Diagnosis of Infection of liver
B67.0	Echinococcus granulosus infection of liver	Infection of liver	Diagnosis of Infection of liver
B67.5	Echinococcus multilocularis infection of liver	Infection of liver	Diagnosis of Infection of liver
B67.8	Echinococcosis, unspecified, of liver	Infection of liver	Diagnosis of Infection of liver
B94.2	Sequelae of viral hepatitis	Infection of liver	Diagnosis of Infection of liver
K75.0	Abscess of liver	Infection of liver	Diagnosis of Infection of liver
K77.0	Liver disorders in infectious and parasitic diseases classified elsewhere	Infection of liver	Diagnosis of Infection of liver

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH201/version/402/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH201/version/402/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH201', '402', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH201/version/402/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH201/version/402/export/codes/?format=json
CSV	site_root/phenotypes/PH201/version/402/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH201', '402', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
402	Infection of liver	ieuan.scanlon	2021-10-06	currently shown