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Infection of liver

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH201
Version ID
402
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
ICD10 codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had Infection of liver IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Secondary care

  1. ALL diagnoses of Infection of liver or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 14
Code Description Disease Category
A06.4 Amoebic liver abscess Infection of liver Diagnosis of Infection of liver
B15 Acute hepatitis A Infection of liver Diagnosis of Infection of liver
B16 Acute hepatitis B Infection of liver Diagnosis of Infection of liver
B17 Other acute viral hepatitis Infection of liver Diagnosis of Infection of liver
B18 Chronic viral hepatitis Infection of liver Diagnosis of Infection of liver
B19 Unspecified viral hepatitis Infection of liver Diagnosis of Infection of liver
B25.1 Cytomegaloviral hepatitis Infection of liver Diagnosis of Infection of liver
B58.1 Toxoplasma hepatitis Infection of liver Diagnosis of Infection of liver
B67.0 Echinococcus granulosus infection of liver Infection of liver Diagnosis of Infection of liver
B67.5 Echinococcus multilocularis infection of liver Infection of liver Diagnosis of Infection of liver
B67.8 Echinococcosis, unspecified, of liver Infection of liver Diagnosis of Infection of liver
B94.2 Sequelae of viral hepatitis Infection of liver Diagnosis of Infection of liver
K75.0 Abscess of liver Infection of liver Diagnosis of Infection of liver
K77.0 Liver disorders in infectious and parasitic diseases classified elsewhere Infection of liver Diagnosis of Infection of liver

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH201/version/402/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH201/version/402/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH201', '402', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH201/version/402/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH201/version/402/export/codes/?format=json
CSV site_root/phenotypes/PH201/version/402/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH201', '402', api_client=client)

Version History

Version
ID
Name Owner Publish date
402 Infection of liver ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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