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Alcoholic liver disease

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH202
Version ID
404
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Alcoholic liver disease' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. 'Alcoholic liver disease' diagnosis or history of diagnosis or procedure during a consultation

OR Secondary care

  1. ALL diagnoses of 'Alcoholic liver disease' or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 10
Code Description Disease Medcode Category
G852300 Oesophageal varices in alcoholic cirrhosis of the liver Alcoholic liver disease 8363.0 Diagnosis of Alcoholic liver disease
J610.00 Alcoholic fatty liver Alcoholic liver disease 10691.0 Diagnosis of Alcoholic liver disease
J611.00 Acute alcoholic hepatitis Alcoholic liver disease 3216.0 Diagnosis of Alcoholic liver disease
J612.00 Alcoholic cirrhosis of liver Alcoholic liver disease 4743.0 Diagnosis of Alcoholic liver disease
J612.12 Laennec's cirrhosis Alcoholic liver disease 100474.0 Diagnosis of Alcoholic liver disease
J612000 Alcoholic fibrosis and sclerosis of liver Alcoholic liver disease 21713.0 Diagnosis of Alcoholic liver disease
J613.00 Alcoholic liver damage unspecified Alcoholic liver disease 7885.0 Diagnosis of Alcoholic liver disease
J613000 Alcoholic hepatic failure Alcoholic liver disease 17330.0 Diagnosis of Alcoholic liver disease
J617.00 Alcoholic hepatitis Alcoholic liver disease 7943.0 Diagnosis of Alcoholic liver disease
J617000 Chronic alcoholic hepatitis Alcoholic liver disease 7602.0 Diagnosis of Alcoholic liver disease
Rows: 10
Code Description Disease ReadcodeDescr Readcode
100474.0 Diagnosis of Alcoholic liver disease Alcoholic liver disease Laennec's cirrhosis J612.12
10691.0 Diagnosis of Alcoholic liver disease Alcoholic liver disease Alcoholic fatty liver J610.00
17330.0 Diagnosis of Alcoholic liver disease Alcoholic liver disease Alcoholic hepatic failure J613000
21713.0 Diagnosis of Alcoholic liver disease Alcoholic liver disease Alcoholic fibrosis and sclerosis of liver J612000
3216.0 Diagnosis of Alcoholic liver disease Alcoholic liver disease Acute alcoholic hepatitis J611.00
4743.0 Diagnosis of Alcoholic liver disease Alcoholic liver disease Alcoholic cirrhosis of liver J612.00
7602.0 Diagnosis of Alcoholic liver disease Alcoholic liver disease Chronic alcoholic hepatitis J617000
7885.0 Diagnosis of Alcoholic liver disease Alcoholic liver disease Alcoholic liver damage unspecified J613.00
7943.0 Diagnosis of Alcoholic liver disease Alcoholic liver disease Alcoholic hepatitis J617.00
8363.0 Diagnosis of Alcoholic liver disease Alcoholic liver disease Oesophageal varices in alcoholic cirrhosis of the liver G852300
Rows: 1
Code Description Disease Category
K70 Alcoholic liver disease Alcoholic liver disease Diagnosis of Alcoholic liver disease

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH202/version/404/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH202/version/404/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH202', '404', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH202/version/404/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH202/version/404/export/codes/?format=json
CSV site_root/phenotypes/PH202/version/404/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH202', '404', api_client=client)

Version History

Version
ID
Name Owner Publish date
404 Alcoholic liver disease ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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