Phenotype Library | phenotype: Alcoholic liver disease

Alcoholic liver disease

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH202

Version ID

404

Type

Disease or Syndrome

Data Sources

CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

♀ Female ♂ Male

Agreement Date

2019-05-20

Coding system

Read codes v2 ICD10 codes Med codes

Collections

CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Alcoholic liver disease' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

'Alcoholic liver disease' diagnosis or history of diagnosis or procedure during a consultation

OR Secondary care

ALL diagnoses of 'Alcoholic liver disease' or history of diagnosis during a hospitalization

Implementation

PhenoFlow Implementation:

https://kclhi.org/phenoflow/phenotype/download/583

Publications

Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

CSV

JSON

XML

Expand All / Collapse All

C1265/3669 Alcoholic liver disease - Primary care - Read codes v2

Rows: 10

Code	Description	Disease	Medcode	Category
G852300	Oesophageal varices in alcoholic cirrhosis of the liver	Alcoholic liver disease	8363.0	Diagnosis of Alcoholic liver disease
J610.00	Alcoholic fatty liver	Alcoholic liver disease	10691.0	Diagnosis of Alcoholic liver disease
J611.00	Acute alcoholic hepatitis	Alcoholic liver disease	3216.0	Diagnosis of Alcoholic liver disease
J612.00	Alcoholic cirrhosis of liver	Alcoholic liver disease	4743.0	Diagnosis of Alcoholic liver disease
J612.12	Laennec's cirrhosis	Alcoholic liver disease	100474.0	Diagnosis of Alcoholic liver disease
J612000	Alcoholic fibrosis and sclerosis of liver	Alcoholic liver disease	21713.0	Diagnosis of Alcoholic liver disease
J613.00	Alcoholic liver damage unspecified	Alcoholic liver disease	7885.0	Diagnosis of Alcoholic liver disease
J613000	Alcoholic hepatic failure	Alcoholic liver disease	17330.0	Diagnosis of Alcoholic liver disease
J617.00	Alcoholic hepatitis	Alcoholic liver disease	7943.0	Diagnosis of Alcoholic liver disease
J617000	Chronic alcoholic hepatitis	Alcoholic liver disease	7602.0	Diagnosis of Alcoholic liver disease

C1266/3671 Alcoholic liver disease - Primary care - Med codes

Rows: 10

Code	Description	Disease	ReadcodeDescr	Readcode
100474.0	Diagnosis of Alcoholic liver disease	Alcoholic liver disease	Laennec's cirrhosis	J612.12
10691.0	Diagnosis of Alcoholic liver disease	Alcoholic liver disease	Alcoholic fatty liver	J610.00
17330.0	Diagnosis of Alcoholic liver disease	Alcoholic liver disease	Alcoholic hepatic failure	J613000
21713.0	Diagnosis of Alcoholic liver disease	Alcoholic liver disease	Alcoholic fibrosis and sclerosis of liver	J612000
3216.0	Diagnosis of Alcoholic liver disease	Alcoholic liver disease	Acute alcoholic hepatitis	J611.00
4743.0	Diagnosis of Alcoholic liver disease	Alcoholic liver disease	Alcoholic cirrhosis of liver	J612.00
7602.0	Diagnosis of Alcoholic liver disease	Alcoholic liver disease	Chronic alcoholic hepatitis	J617000
7885.0	Diagnosis of Alcoholic liver disease	Alcoholic liver disease	Alcoholic liver damage unspecified	J613.00
7943.0	Diagnosis of Alcoholic liver disease	Alcoholic liver disease	Alcoholic hepatitis	J617.00
8363.0	Diagnosis of Alcoholic liver disease	Alcoholic liver disease	Oesophageal varices in alcoholic cirrhosis of the liver	G852300

C1267/3673 Alcoholic liver disease - Secondary care - Diagnoses - ICD10 codes

Rows: 1

Code	Description	Disease	Category
K70	Alcoholic liver disease	Alcoholic liver disease	Diagnosis of Alcoholic liver disease

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH202/version/404/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH202/version/404/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH202', '404', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH202/version/404/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH202/version/404/export/codes/?format=json
CSV	site_root/phenotypes/PH202/version/404/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH202', '404', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
404	Alcoholic liver disease	ieuan.scanlon	2021-10-06	currently shown