Phenotype Library | phenotype: Infection of male genital system

Infection of male genital system

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH206

Version ID

412

Type

Disease or Syndrome

Data Sources

HES Admitted Patient Care data for CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

♀ Female ♂ Male

Agreement Date

2019-05-20

Coding system

ICD10 codes

Collections

CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had Infection of male genital system IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Secondary care

ALL diagnoses of Infection of male genital system or history of diagnosis during a hospitalization

Implementation

PhenoFlow Implementation:

https://kclhi.org/phenoflow/phenotype/download/596

Publications

Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

CSV

JSON

XML

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C1275/3689 Infection of male genital system - Secondary care - Diagnoses - ICD10 codes

Rows: 7

Code	Description	Disease	Category
B26.0	Mumps orchitis	Infection of male genital system	Diagnosis of Infection of male genital system NOS
N41.0	Acute prostatitis	Infection of male genital system	Diagnosis of Infection of male genital system NOS
N41.2	Abscess of prostate	Infection of male genital system	Diagnosis of Infection of male genital system NOS
N41.3	Prostatocystitis	Infection of male genital system	Diagnosis of Infection of male genital system NOS
N43.1	Infected hydrocele	Infection of male genital system	Diagnosis of Infection of male genital system NOS
N45	Orchitis and epididymitis	Infection of male genital system	Diagnosis of Infection of male genital system NOS
N48.1	Balanoposthitis	Infection of male genital system	Diagnosis of Infection of male genital system NOS

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH206/version/412/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH206/version/412/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH206', '412', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH206/version/412/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH206/version/412/export/codes/?format=json
CSV	site_root/phenotypes/PH206/version/412/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH206', '412', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
412	Infection of male genital system	ieuan.scanlon	2021-10-06	currently shown