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Infection of male genital system

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH206
Version ID
412
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
ICD10 codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had Infection of male genital system IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Secondary care

  1. ALL diagnoses of Infection of male genital system or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 7
Code Description Disease Category
B26.0 Mumps orchitis Infection of male genital system Diagnosis of Infection of male genital system NOS
N41.0 Acute prostatitis Infection of male genital system Diagnosis of Infection of male genital system NOS
N41.2 Abscess of prostate Infection of male genital system Diagnosis of Infection of male genital system NOS
N41.3 Prostatocystitis Infection of male genital system Diagnosis of Infection of male genital system NOS
N43.1 Infected hydrocele Infection of male genital system Diagnosis of Infection of male genital system NOS
N45 Orchitis and epididymitis Infection of male genital system Diagnosis of Infection of male genital system NOS
N48.1 Balanoposthitis Infection of male genital system Diagnosis of Infection of male genital system NOS

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH206/version/412/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH206/version/412/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH206', '412', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH206/version/412/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH206/version/412/export/codes/?format=json
CSV site_root/phenotypes/PH206/version/412/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH206', '412', api_client=client)

Version History

Version
ID
Name Owner Publish date
412 Infection of male genital system ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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