Phenotype Library | phenotype: Male infertility

Male infertility

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH207

Version ID

414

Type

Disease or Syndrome

Data Sources

CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

♀ Female ♂ Male

Agreement Date

2019-05-20

Coding system

Read codes v2 ICD10 codes Med codes

Collections

CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Male infertility' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

'Male infertility' diagnosis or history of diagnosis during a consultation

'Male infertility' possible diagnosis during a consultation IF patient = male OR Secondary care
ALL diagnoses of 'Male infertility' or history of diagnosis during a hospitalization

Implementation

PhenoFlow Implementation:

https://kclhi.org/phenoflow/phenotype/download/598

Publications

Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

CSV

JSON

XML

Expand All / Collapse All

C1276/3691 Male infertility - Primary care - Read codes v2

Rows: 22

Code	Description	Disease	Medcode	Category
4914.00	Semen exam.: low fertility	Male infertility	38990.0	Diagnosis of Male infertility
4915.00	Semen exam.:very low fertility	Male infertility	61954.0	Diagnosis of Male infertility
4916.00	Semen exam.: infertile	Male infertility	7273.0	Diagnosis of Male infertility
4917.00	Semen exam: abnormal	Male infertility	4520.0	Diagnosis of Male infertility
K26..00	Male infertility	Male infertility	766.0	Diagnosis of Male infertility
K260.00	Azoospermia	Male infertility	3331.0	Diagnosis of Male infertility
K260.11	Young's syndrome	Male infertility	32485.0	Diagnosis of Male infertility
K261.00	Oligospermia	Male infertility	1615.0	Diagnosis of Male infertility
K261000	Oligoasthenozoospermia	Male infertility	102597.0	Diagnosis of Male infertility
K262.00	Aspermia	Male infertility	102703.0	Diagnosis of Male infertility
K26y.00	Infertility due to extratesticular cause	Male infertility	99607.0	Diagnosis of Male infertility
K26y200	Infertility due to efferent duct obstruction	Male infertility	36264.0	Diagnosis of Male infertility
K26y300	Infertility due to radiation	Male infertility	101598.0	Possible diagnosis of Male infertility
K26y400	Infertility in systemic disease	Male infertility	108577.0	Possible diagnosis of Male infertility
K26yz00	Infertility due to extratesticular cause NOS	Male infertility	58858.0	Diagnosis of Male infertility
K26z.00	Male infertility NOS	Male infertility	5292.0	Diagnosis of Male infertility
K5B1000	Primary pituitary - hypothalamic infertility	Male infertility	94448.0	Possible diagnosis of Male infertility
K5B1100	Secondary pituitary - hypothalamic infertility	Male infertility	99535.0	Possible diagnosis of Male infertility
K5B6.00	Female infertility associated with male factors	Male infertility	54282.0	Diagnosis of Male infertility
K5By000	Primary infertility unspecified	Male infertility	2014.0	Possible diagnosis of Male infertility
K5By100	Secondary infertility unspecified	Male infertility	1943.0	Possible diagnosis of Male infertility
K5Byz11	Subfertility	Male infertility	7246.0	Possible diagnosis of Male infertility

C1277/3693 Male infertility - Primary care - Med codes

Rows: 22

Code	Description	Disease	ReadcodeDescr	Readcode
101598.0	Possible diagnosis of Male infertility	Male infertility	Infertility due to radiation	K26y300
102597.0	Diagnosis of Male infertility	Male infertility	Oligoasthenozoospermia	K261000
102703.0	Diagnosis of Male infertility	Male infertility	Aspermia	K262.00
108577.0	Possible diagnosis of Male infertility	Male infertility	Infertility in systemic disease	K26y400
1615.0	Diagnosis of Male infertility	Male infertility	Oligospermia	K261.00
1943.0	Possible diagnosis of Male infertility	Male infertility	Secondary infertility unspecified	K5By100
2014.0	Possible diagnosis of Male infertility	Male infertility	Primary infertility unspecified	K5By000
32485.0	Diagnosis of Male infertility	Male infertility	Young's syndrome	K260.11
3331.0	Diagnosis of Male infertility	Male infertility	Azoospermia	K260.00
36264.0	Diagnosis of Male infertility	Male infertility	Infertility due to efferent duct obstruction	K26y200
38990.0	Diagnosis of Male infertility	Male infertility	Semen exam.: low fertility	4914.00
4520.0	Diagnosis of Male infertility	Male infertility	Semen exam: abnormal	4917.00
5292.0	Diagnosis of Male infertility	Male infertility	Male infertility NOS	K26z.00
54282.0	Diagnosis of Male infertility	Male infertility	Female infertility associated with male factors	K5B6.00
58858.0	Diagnosis of Male infertility	Male infertility	Infertility due to extratesticular cause NOS	K26yz00
61954.0	Diagnosis of Male infertility	Male infertility	Semen exam.:very low fertility	4915.00
7246.0	Possible diagnosis of Male infertility	Male infertility	Subfertility	K5Byz11
7273.0	Diagnosis of Male infertility	Male infertility	Semen exam.: infertile	4916.00
766.0	Diagnosis of Male infertility	Male infertility	Male infertility	K26..00
94448.0	Possible diagnosis of Male infertility	Male infertility	Primary pituitary - hypothalamic infertility	K5B1000
99535.0	Possible diagnosis of Male infertility	Male infertility	Secondary pituitary - hypothalamic infertility	K5B1100
99607.0	Diagnosis of Male infertility	Male infertility	Infertility due to extratesticular cause	K26y.00

C1278/3695 Male infertility - Secondary care - Diagnoses - ICD10 codes

Rows: 1

Code	Description	Disease	Category
N46	Male infertility	Male infertility	Diagnosis of Male Infertility

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH207/version/414/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH207/version/414/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH207', '414', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH207/version/414/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH207/version/414/export/codes/?format=json
CSV	site_root/phenotypes/PH207/version/414/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH207', '414', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
414	Male infertility	ieuan.scanlon	2021-10-06	currently shown