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Male infertility

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH207
Version ID
414
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Male infertility' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. 'Male infertility' diagnosis or history of diagnosis during a consultation

OR

  1. 'Male infertility' possible diagnosis during a consultation IF patient = male OR Secondary care

  2. ALL diagnoses of 'Male infertility' or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 22
Code Description Disease Medcode Category
4914.00 Semen exam.: low fertility Male infertility 38990.0 Diagnosis of Male infertility
4915.00 Semen exam.:very low fertility Male infertility 61954.0 Diagnosis of Male infertility
4916.00 Semen exam.: infertile Male infertility 7273.0 Diagnosis of Male infertility
4917.00 Semen exam: abnormal Male infertility 4520.0 Diagnosis of Male infertility
K26..00 Male infertility Male infertility 766.0 Diagnosis of Male infertility
K260.00 Azoospermia Male infertility 3331.0 Diagnosis of Male infertility
K260.11 Young's syndrome Male infertility 32485.0 Diagnosis of Male infertility
K261.00 Oligospermia Male infertility 1615.0 Diagnosis of Male infertility
K261000 Oligoasthenozoospermia Male infertility 102597.0 Diagnosis of Male infertility
K262.00 Aspermia Male infertility 102703.0 Diagnosis of Male infertility
K26y.00 Infertility due to extratesticular cause Male infertility 99607.0 Diagnosis of Male infertility
K26y200 Infertility due to efferent duct obstruction Male infertility 36264.0 Diagnosis of Male infertility
K26y300 Infertility due to radiation Male infertility 101598.0 Possible diagnosis of Male infertility
K26y400 Infertility in systemic disease Male infertility 108577.0 Possible diagnosis of Male infertility
K26yz00 Infertility due to extratesticular cause NOS Male infertility 58858.0 Diagnosis of Male infertility
K26z.00 Male infertility NOS Male infertility 5292.0 Diagnosis of Male infertility
K5B1000 Primary pituitary - hypothalamic infertility Male infertility 94448.0 Possible diagnosis of Male infertility
K5B1100 Secondary pituitary - hypothalamic infertility Male infertility 99535.0 Possible diagnosis of Male infertility
K5B6.00 Female infertility associated with male factors Male infertility 54282.0 Diagnosis of Male infertility
K5By000 Primary infertility unspecified Male infertility 2014.0 Possible diagnosis of Male infertility
K5By100 Secondary infertility unspecified Male infertility 1943.0 Possible diagnosis of Male infertility
K5Byz11 Subfertility Male infertility 7246.0 Possible diagnosis of Male infertility
Rows: 22
Code Description Disease ReadcodeDescr Readcode
101598.0 Possible diagnosis of Male infertility Male infertility Infertility due to radiation K26y300
102597.0 Diagnosis of Male infertility Male infertility Oligoasthenozoospermia K261000
102703.0 Diagnosis of Male infertility Male infertility Aspermia K262.00
108577.0 Possible diagnosis of Male infertility Male infertility Infertility in systemic disease K26y400
1615.0 Diagnosis of Male infertility Male infertility Oligospermia K261.00
1943.0 Possible diagnosis of Male infertility Male infertility Secondary infertility unspecified K5By100
2014.0 Possible diagnosis of Male infertility Male infertility Primary infertility unspecified K5By000
32485.0 Diagnosis of Male infertility Male infertility Young's syndrome K260.11
3331.0 Diagnosis of Male infertility Male infertility Azoospermia K260.00
36264.0 Diagnosis of Male infertility Male infertility Infertility due to efferent duct obstruction K26y200
38990.0 Diagnosis of Male infertility Male infertility Semen exam.: low fertility 4914.00
4520.0 Diagnosis of Male infertility Male infertility Semen exam: abnormal 4917.00
5292.0 Diagnosis of Male infertility Male infertility Male infertility NOS K26z.00
54282.0 Diagnosis of Male infertility Male infertility Female infertility associated with male factors K5B6.00
58858.0 Diagnosis of Male infertility Male infertility Infertility due to extratesticular cause NOS K26yz00
61954.0 Diagnosis of Male infertility Male infertility Semen exam.:very low fertility 4915.00
7246.0 Possible diagnosis of Male infertility Male infertility Subfertility K5Byz11
7273.0 Diagnosis of Male infertility Male infertility Semen exam.: infertile 4916.00
766.0 Diagnosis of Male infertility Male infertility Male infertility K26..00
94448.0 Possible diagnosis of Male infertility Male infertility Primary pituitary - hypothalamic infertility K5B1000
99535.0 Possible diagnosis of Male infertility Male infertility Secondary pituitary - hypothalamic infertility K5B1100
99607.0 Diagnosis of Male infertility Male infertility Infertility due to extratesticular cause K26y.00
Rows: 1
Code Description Disease Category
N46 Male infertility Male infertility Diagnosis of Male Infertility

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH207/version/414/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH207/version/414/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH207', '414', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH207/version/414/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH207/version/414/export/codes/?format=json
CSV site_root/phenotypes/PH207/version/414/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH207', '414', api_client=client)

Version History

Version
ID
Name Owner Publish date
414 Male infertility ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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