Print

Meningitis

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH209
Version ID
418
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
ICD10 codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Meningitis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Secondary care

  1. ALL diagnoses of 'Meningitis' or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 18
Code Description Disease Category
A17.0 Tuberculous meningitis Meningitis Diagnosis of Meningitis
A17.1 Meningeal tuberculoma Meningitis Diagnosis of Meningitis
A20.3 Plague meningitis Meningitis Diagnosis of Meningitis
A32.1 Listerial meningitis and meningoencephalitis Meningitis Diagnosis of Meningitis
A39.0 Meningococcal meningitis Meningitis Diagnosis of Meningitis
A87 Viral meningitis Meningitis Diagnosis of Meningitis
B00.3 Herpesviral meningitis Meningitis Diagnosis of Meningitis
B01.0 Varicella meningitis Meningitis Diagnosis of Meningitis
B02.1 Zoster meningitis Meningitis Diagnosis of Meningitis
B05.1 Measles complicated by meningitis Meningitis Diagnosis of Meningitis
B26.1 Mumps meningitis Meningitis Diagnosis of Meningitis
B37.5 Candidal meningitis Meningitis Diagnosis of Meningitis
B38.4 Coccidioidomycosis meningitis Meningitis Diagnosis of Meningitis
G00 Bacterial meningitis, not elsewhere classified Meningitis Diagnosis of Meningitis
G01 Meningitis in bacterial diseases classified elsewhere Meningitis Diagnosis of Meningitis
G02.0 Meningitis in viral diseases classified elsewhere Meningitis Diagnosis of Meningitis
G02.1 Meningitis in mycoses Meningitis Diagnosis of Meningitis
G02.8 Meningitis in other specified infectious and parasitic diseases classified elsewhere Meningitis Diagnosis of Meningitis

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH209/version/418/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH209/version/418/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH209', '418', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH209/version/418/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH209/version/418/export/codes/?format=json
CSV site_root/phenotypes/PH209/version/418/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH209', '418', api_client=client)

Version History

Version
ID
Name Owner Publish date
418 Meningitis ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

Print - Print page.